Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3092 ATGTTTGATGGGGCTTCACCACCTGGAACAACACCAGCACCTCTAAAAAATAGGAGTGCTTCTGCATATAACATGTTGCTGGGATTTGTTGCAGGAATTTCAACAGTCATGGTAGTGGCCTTATTGTACTGCCTTTTCAGGAAAAAGTTCATTCCATTTCATAAGCAAAGAAAGACTTTGAAAGGAAAGAAATTTAAAAGCGTGATAGATGATAAAATATCGCTAAGGCGTTTTGATTTTGCGGAACTAGAGAAGGCTACCAAAAGTTTTAACCAAGATTGCTTGCTGGGTTCTGGTGCGTTTGGAAATGTCTACAAGGGAACCTTTGACTTAGAAAGAACACTAGCCATTAAGAGAGCTCATTCTCAATCATACTTAAGTGTGGAGGAATTCAGAAATGAAGTTAGGCTCCTGTCAGCAGTAAAGCACAGGAATCTTATTGGTCTGGTTGGATATTGTGAAGAACCAGAACAAGATGGAGCCAAAATACTAGTCTACGAATATGTACCAAATGGATCACTCCTTGAGTATATGATAGGAAGCAAAAGGGACAGCTTAACATGGAAACAAAGGGTAAATATAGCAATAGGAGCAGCTAGAGGCATAGCTTATTTGCATGAAGGAGTTAAGCCAAGCATCATTCATCGTGACATCAAACCAAGTAACATCCTATTAGGGGAAAACTTTGAAGCTAAGGTCTCAGATTTTGGACTGGTAAAATCAGGACCTACTGGTGATCAATCACATGTCAGTAGCCAAATCAAAGGGACACCAGGGTACCTTGACCCTGCCTATTGTTCAAGCTTTCATTTGACCAAGTTCAGTGATGTTTACAGCTTTGGTGTCATACTTTTGCAACTTGTTTCAGCTAGACCAGCTGTGGATAGTACAGAAAACCAAAGCAAACAACATATAATAAACTGGGCAAGGCCTAGCATAGAGAGGGATAATGTAGAAGAAATCATGGATGCAAATCTACTATGTCAAAGTGAACCATGCAATATGAAAGTTATGCTAAAGATGGGGCAACTAGCTATAAGATGTGTCGCTCAAGAGCCAAAACAACGCCCTACAATGACTCAGGTGTGTAGAGAACTAGAGCAAACTCTCTACAAAGCTGATAGCTTCGATAAAAAGAAGCTTTCAAAAGGTACTAGTGAATCAGAGGAGCACTACAATTTTTCACAGAGCTTTGTGAGCATAGACGGTGTTGGACTTCAGAAGTTCCATATTGACATGGATAGCTACTCCTTTCATAGCACTAACTTAAGGTGCCTAGAAAATAATAGTATTAGCATTGACATTGAGAAGAAGGATCTGAAGAGTATACATGAGAAGGAGACTATTTAA 1350 0.3956 MFDGASPPGTTPAPLKNRSASAYNMLLGFVAGISTVMVVALLYCLFRKKFIPFHKQRKTLKGKKFKSVIDDKISLRRFDFAELEKATKSFNQDCLLGSGAFGNVYKGTFDLERTLAIKRAHSQSYLSVEEFRNEVRLLSAVKHRNLIGLVGYCEEPEQDGAKILVYEYVPNGSLLEYMIGSKRDSLTWKQRVNIAIGAARGIAYLHEGVKPSIIHRDIKPSNILLGENFEAKVSDFGLVKSGPTGDQSHVSSQIKGTPGYLDPAYCSSFHLTKFSDVYSFGVILLQLVSARPAVDSTENQSKQHIINWARPSIERDNVEEIMDANLLCQSEPCNMKVMLKMGQLAIRCVAQEPKQRPTMTQVCRELEQTLYKADSFDKKKLSKGTSESEEHYNFSQSFVSIDGVGLQKFHIDMDSYSFHSTNLRCLENNSISIDIEKKDLKSIHEKETI* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3092 449 SUPERFAMILY Protein kinase-like (PK-like) 72 367 IPR011009 -
Lja4g3092 449 Gene3D Transferase(Phosphotransferase) domain 1 169 391 - -
Lja4g3092 449 SMART serkin_6 90 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3092 449 Pfam Protein tyrosine and serine/threonine kinase 94 366 IPR001245 GO:0004672|GO:0006468
Lja4g3092 449 ProSiteProfiles Protein kinase domain profile. 90 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3092 449 ProSitePatterns Protein kinases ATP-binding region signature. 96 118 IPR017441 GO:0005524
Lja4g3092 449 CDD STKc_IRAK 96 368 - -
Lja4g3092 449 Gene3D Phosphorylase Kinase; domain 1 52 168 - -
Lja4g3092 449 PANTHER OS01G0750732 PROTEIN 23 396 - -
Lja4g3092 449 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3092 Lja-Chr4 58534700 58537086 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3092 76 380 Receptor kinase-like Gene Family AT1G30570 43.279 3.24e-80 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Lja4g3092 PK_Tyr_Ser-Thr 2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3092 - - gmx:100817470 668.692