Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3091 ATGGAGTTTGAGGCAAATCAACGCCCTTTCTTGTGTTCTTTCGGGAATTTCGTTGAAACTCTCAAACGTGGTTGCAGCCTCGCCTTCTCTGCCATAATAGGGAACATCTTGTCGGCGATCTTGACCTTCTGCTTCGCATTCGTGGGCACTTTGTTAGGGGCTATGACTGGGGCCTTGATAGGCCAAGAGACAGAGAGTGGCTTTGTAAGAGGGGCTGCTGTTGGTGCTATATCAGGAGCTGTTTTCTCCATTGAAGTGTTTGAATCCTCGCGTGTTCTTTGGCAATCTGACGAATCTGGATTTAGGTGTCTCTTATACTTGATTGATGTTATTGCTAGCCTTCTGAGTGGGAGACTCGTGCGTGAAAGGATAGGTCCAGCCATGTTTAGTGCTGTCCAAAGCCAAATGGGTGCTGTCGAATCGGGCTTTGATGAGGTTCAAAACCTCTTTGACATTGGTGATGCCAAAGGTTTATCAGGAGCTTCAGTTGCAAAGATCCCACAGGTAACAATTACCGGAAACAACGGTGATGCTTCTGGTCAAAGAGATTCATGTTCAGTTTGCCTCCAGGACTTTCAACTCGGAGAGACAGTTAGGAGCTTACCCTACTGTCATCACATGTTTCACCTACCTTGCATCGACGAGTGGCTCAGCAAGCATGTTTCTTGCCCATTATGCAGAAGGGATATGTAA 693 0.469 MEFEANQRPFLCSFGNFVETLKRGCSLAFSAIIGNILSAILTFCFAFVGTLLGAMTGALIGQETESGFVRGAAVGAISGAVFSIEVFESSRVLWQSDESGFRCLLYLIDVIASLLSGRLVRERIGPAMFSAVQSQMGAVESGFDEVQNLFDIGDAKGLSGASVAKIPQVTITGNNGDASGQRDSCSVCLQDFQLGETVRSLPYCHHMFHLPCIDEWLSKHVSCPLCRRDM* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3091 230 PANTHER RING/U-BOX SUPERFAMILY PROTEIN-RELATED 13 230 - -
Lja4g3091 230 SUPERFAMILY RING/U-box 178 229 - -
Lja4g3091 230 ProSiteProfiles Zinc finger RING-type profile. 185 227 IPR001841 -
Lja4g3091 230 CDD RING-H2_PA-TM-RING 185 227 - -
Lja4g3091 230 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 13 230 IPR044523 -
Lja4g3091 230 SMART ring_2 185 226 IPR001841 -
Lja4g3091 230 Pfam Ring finger domain 183 227 IPR001841 -
Lja4g3091 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 230 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3091 Lja-Chr4 58528241 58530070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3091 16 230 C3H Transcription Factor Family AT5G66070 70.698 2.31e-107 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3091 - - gmx:100816939 364.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0584 2 5242462 5244558 Lja4g3091 4 58528241 58530070 PCT