Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3074 ATGATTTGTGTTTGGGTTGTTATGGTATTGGTGGTTCTCTCCAATGGATGGTTCTCTTCAAATGGGGTTGTTGCCATGGATAATTCCACAGTACCTGCTTTTGTCAATATTGGGGTTCTCTACTCTTTCAACACCAGTGTTGGTAGAATTGTGAAAATTGCTGTTGATGCTGCTGTTCAAGATGTAAATTCTGATCCATCAATTCTTGGTAAAACTGAGTTAAGGGTCTCACTGCAAGAAGATTCCAAATACAGAGGTTTTCTGAGCATTGCTGAAGCCTTGCAGCTCATGGCAACACACACCGTAGCCATAATTGGCCCCCAGACCTCTACAACAGCTCATGTCATATCTCATATAGCGAACGAGCTCAAAGTTCCTCTGCTATCATTTTCAGCCACTGACCCTACCCTTTCTTCGCTTCAATTCCCGTTCTTTATAAGAACTGCTTTTAGTGACATGTATGAAATGACCGCGATAGCAGACTTTGTTAACCACTTTGGATGGAGAGAGGTTATTGCTGTCTATGGTGATGATGACCATGGGAGGAACGGGATCGGCTCATTAGGGGATAAGCTTGCTGACAGACGTTGCAAGATCTCATTTAAAGCGGCAATGACACCTGAGGCGACCAGGGAGGAGATCACTGATGTGCTTGTTCAGGTGGCTTTAGCCGAATCCCGAGTTATAGTTCTTCACACAAGTACTGCTTGGGGTCCGAAAGTGCTGAGTGTGGCAAAGTCTCTTGGAATGATGGAAAATGGGTATGTCTGGATTGCCACTACTTTTCTGTCTAGTTGGCTGGACATAGCTAGTCCCCTCTCACCGGATGAAATGGATACGATTCAAGGAGTTGTTACTTTTCGTATGTACACACCTGATTCGAAGCTCAAAAGATGGTTTGTTTCTAGGTGGGCAAATTTGACTAGTGGAAAGACTGATTATCCCCTTGGTTTAAGTACTTATGGTATCTTTGCATATGACACTGTTTATGCCCTTGCTCATGCACTTGATGCTTTTCTCAAACAAGGGAACCAGATTACATTTTCACATGATCCAAAGTTATCTGCACTGCAAGGAGGCAATATGCATCTTGATGCTGTGAAAATCTTCAATCAAGGAAATCTGTTGAGGAAAAGTATTCATGAGGTTAACATGACCGGGGTGTCAGGTCCATTCAGCTATGATTCTGATGGAAACCTTGTTAATCCAGCATATGAAATCATCAATGTGATCGGAACAGGGGTACGAAGGATCGGTTATTGGTCTAATTACTCTGGATTATCAGTTGTTCCTCCAGAAGCACTTTACTCAAAACCAGCTAATCGTTCTAGCGCAAATAAAAAACTACTCCCTGTGTTTTGGCCAGGGGAGACAACCCAGAAGCCCCGCGGTTGGGTTTTTCCAAACAATGGAAGACTGCTAAAAATTGGAGTGCCGAAAAGGGTTAGTTATCGCGAATTTCTCTCTCAAGTACAAGGCACTGACATGTTCAAGGGATTCTGCATTGAGGTGTTTCTTTCTGCAGCAAACTTGTTGCCCTATGCTGTCCCCTATAAGTTTATTTCATATGGGGATGGTAAGAGTAATCCTAGTAACACTGAGCTTGTGCGTCTTATCACTGCGGGCGTCTTTGATGCTGCAGTAGGTGACATTACAATTACTACAGAAAGAACAAAGCTGGTGGATTTCACTCAGCCATATATTGAATCAGGTCTAGTGGTAGTTGCATCAGTTAAGAAGACAGAATCCAATGCTTGGGCATTTTTGACGCCATTTACACCAATGATGTGGACTGTCACAGCTATCTTTTTCCTACTAGTGGGAGCTGTTGTTTGGATTTTAGAACATAGGCTGAATGATGAGTTTAGGGGACCTCCCAAAAAACAAATTGTCACCATTTTGTGGTTTAGCTTTTCAACTATGTTCTTTGCTCACAGGGAAAATACAGTTAGCACTCTTGGTCGCTTTGTGCTGCTTATATGGCTATTTGTAGTTCTAATAATTAACTCAAGTTACACGGCAAGCCTGACTTCAATCCTCACTGTACAACAACTTTCTTCACCTGTTAAAGGCATTGAAAGTTTAATAAGTAGCAAAGAACGTATAGGCTACTTGCAGGGTTCTTTTACTCGAACTTATTTAATTGAGGAAATGGGTATTGATGAATCCAGACTAGTTCCTCTAAAAGACCCTGAAGAAACTACCAAGGCACTGGAAAAAGGTCCACATAAGGGTGGTATTGCTGCATATGTCGATGAGCGTGCTTACATAGAGCTTTTCCTTTCGACTCGGTGCGATTTTAGTGTTATAGGCCAGGAGTTCACCAGAAATGGTTGGGGATTTGCCTTTCCACGAGACTCACCATTAGCACTTGACATGTCAACTGCAATTCTGGAATTGGCAGAAAATGGAGATTTGCAAAGGATCCATGATAAATGGCTTCTGCGGAGAGCTTGCCTATCACAAGGTGCAAAGCTTGAAGTGGATAGGCTCAATCTCAGAAGCTTTTGGGGCCTCTACTTAGTCTGTGGGTTGGCATGTTTACTTGCTCTACTCATATATCTTTTTCAAACCCTGCGGCAGTATAAGAAGCACGGCCCGGAGGAACTTGAGTCTTCTTCTGGTCAAGGCGCATCAGGATCTACACGATTGCAAACTTTTCTTTCATTTGTTGATGAAAAAGAAGAGATAGTTAAGACCCGCTCCAAGAGAAGACAAATGGAGAGGATATCATATAGAAGCACAAGTGAGGTTGGATCATCCATCATCTCCAATAAAGAATTTTCTCTCTCGTCGTTAAGCAGAATTGATTCAGCTAATGAAGTCTAA 2829 0.4249 MICVWVVMVLVVLSNGWFSSNGVVAMDNSTVPAFVNIGVLYSFNTSVGRIVKIAVDAAVQDVNSDPSILGKTELRVSLQEDSKYRGFLSIAEALQLMATHTVAIIGPQTSTTAHVISHIANELKVPLLSFSATDPTLSSLQFPFFIRTAFSDMYEMTAIADFVNHFGWREVIAVYGDDDHGRNGIGSLGDKLADRRCKISFKAAMTPEATREEITDVLVQVALAESRVIVLHTSTAWGPKVLSVAKSLGMMENGYVWIATTFLSSWLDIASPLSPDEMDTIQGVVTFRMYTPDSKLKRWFVSRWANLTSGKTDYPLGLSTYGIFAYDTVYALAHALDAFLKQGNQITFSHDPKLSALQGGNMHLDAVKIFNQGNLLRKSIHEVNMTGVSGPFSYDSDGNLVNPAYEIINVIGTGVRRIGYWSNYSGLSVVPPEALYSKPANRSSANKKLLPVFWPGETTQKPRGWVFPNNGRLLKIGVPKRVSYREFLSQVQGTDMFKGFCIEVFLSAANLLPYAVPYKFISYGDGKSNPSNTELVRLITAGVFDAAVGDITITTERTKLVDFTQPYIESGLVVVASVKKTESNAWAFLTPFTPMMWTVTAIFFLLVGAVVWILEHRLNDEFRGPPKKQIVTILWFSFSTMFFAHRENTVSTLGRFVLLIWLFVVLIINSSYTASLTSILTVQQLSSPVKGIESLISSKERIGYLQGSFTRTYLIEEMGIDESRLVPLKDPEETTKALEKGPHKGGIAAYVDERAYIELFLSTRCDFSVIGQEFTRNGWGFAFPRDSPLALDMSTAILELAENGDLQRIHDKWLLRRACLSQGAKLEVDRLNLRSFWGLYLVCGLACLLALLIYLFQTLRQYKKHGPEELESSSGQGASGSTRLQTFLSFVDEKEEIVKTRSKRRQMERISYRSTSEVGSSIISNKEFSLSSLSRIDSANEV* 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3074 942 CDD PBP1_GABAb_receptor_plant 36 431 IPR044440 -
Lja4g3074 942 Pfam Bacterial extracellular solute-binding proteins, family 3 522 814 IPR001638 -
Lja4g3074 942 Gene3D - 53 402 - -
Lja4g3074 942 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 16 934 - -
Lja4g3074 942 Gene3D - 585 716 - -
Lja4g3074 942 Pfam Receptor family ligand binding region 52 412 IPR001828 -
Lja4g3074 942 SUPERFAMILY Periplasmic binding protein-like II 449 815 - -
Lja4g3074 942 Pfam Ligand-gated ion channel 815 847 IPR001320 GO:0015276|GO:0016020
Lja4g3074 942 SMART GluR_14 475 816 IPR001320 GO:0015276|GO:0016020
Lja4g3074 942 Gene3D - 151 427 - -
Lja4g3074 942 Gene3D - 475 584 - -
Lja4g3074 942 Gene3D - 756 821 - -
Lja4g3074 942 SUPERFAMILY Periplasmic binding protein-like I 32 466 IPR028082 -
Lja4g3074 942 PANTHER GLUTAMATE RECEPTOR 16 934 - -
Lja4g3074 942 CDD GluR_Plant 474 814 - -
Lja4g3074 942 PIRSF IGluLR_plant 1 938 IPR017103 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3074 Lja-Chr4 58255167 58259703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3074 29 918 Ion Channels AT3G51480 59.820 0.0 1139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3074 K05387 - gmx:100788917 1585.85