Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3071 ATGTCTTGTTCTTCTTCATCTGGGTCGGAAGAAGACGATGAGGGGCTCGAATCCTACCGGAAAGGAGGCTACCACGCCGTCAGGGTCGCCGATCAGTTCGCCGGAGGAAGGTACATAGCGCAGAGGAAGCTTGGTTGGGGTCAGTTTTCAACCGTTTGGCTTGCTTATGATACTATAACCTCTGGATATGTTGCTCTCAAGATCCAGAAAAGTGCTGCCCAGTTTGTTCAGGCTGCCCTTCATGAGATTGAAATTCTTTCATCCATTGCTGATAGTGCTCCTTCCAATTCAAAATTTGTTGTCCAATTGATTGACCAGTTTAAGCACACGGGCCCTAATGGCCAGCATCTTTGCATGGTCCTCGAGTATCTTGGAGATAGCTTGCTTCGTCTAATCAGATACAACCATTATAGATGCCTTCCAATGAATAAAGTTAGGGAGATTTGCAAATGCATTTTGATTGGTTTGGATTACTTGCACAGAGAACATGGTATCATCCACACAGACCTAAAACCAGAGAATGTTCTTCTGGTTTCTACAATTGATCCTGCCAAAGACCCTATTAGATCGGGATTCACCCCAATATTAGAGAGGCCAGAGGGAAACATAAATGGCGGAGTTACGAGTCTTATTGAGAAAAAGTTGAAAAGGAGAGCAAGGAGGGCGGTTGCTAAAATATCTGGACGAAGAGTTTCAATGGGAGGAACAGGAGAAGCTCATAAGTCTGATAGAAACATGGATGGGATTGATGTGCGATGCAAGGTGGTAGATTTTGGAAATGCATGCTGGGCGGATAAGCAGTTTGCGGAAGAGATTCAGACACGACAGTACAGAGCTCCTGAAGTAATACTTCAGGCTGGTTATTCCTTCTCTGTCGACATGTGGTCTTTTGCGTGTATAACTTTTGAGCTTGCCACTGGTGATATGTTGTTTACTCCCAAGGATGGGCAAGGTTTTAGTGAGGATGAGGATCACCTTGCCTTGATGATGGAACTCCTTGGAAAAATGCCCCGGAAGATTGCTATTGCCGGAGCAAAATCCAAGGATTTCTTTGACAGACACGGGGATCTCAAAAGGATTCGAAGACTAAAATTTTTGCCGCTTAACAAATTGCTGATTGATAAATATAAGTTTTCGGAGATTGATGCTCATGAGTTTTCGGAGTTTCTTTTACCTCTTCTTGATTTTGCGCCTGAGAGGCGGCCAACTGCAGAGCAGTGCCTGCAGCACCCATGGTTCAATTGCAAGGAGTCTATTCCAAATGAAATGATAAATGAATCTAGTGTGGAAAAGGTGGATGTTGGGATGAGCAACCTTAAAATCAAGGTAGGAAAGTGA 1338 0.4417 MSCSSSSGSEEDDEGLESYRKGGYHAVRVADQFAGGRYIAQRKLGWGQFSTVWLAYDTITSGYVALKIQKSAAQFVQAALHEIEILSSIADSAPSNSKFVVQLIDQFKHTGPNGQHLCMVLEYLGDSLLRLIRYNHYRCLPMNKVREICKCILIGLDYLHREHGIIHTDLKPENVLLVSTIDPAKDPIRSGFTPILERPEGNINGGVTSLIEKKLKRRARRAVAKISGRRVSMGGTGEAHKSDRNMDGIDVRCKVVDFGNACWADKQFAEEIQTRQYRAPEVILQAGYSFSVDMWSFACITFELATGDMLFTPKDGQGFSEDEDHLALMMELLGKMPRKIAIAGAKSKDFFDRHGDLKRIRRLKFLPLNKLLIDKYKFSEIDAHEFSEFLLPLLDFAPERRPTAEQCLQHPWFNCKESIPNEMINESSVEKVDVGMSNLKIKVGK* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3071 445 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 5 445 - -
Lja4g3071 445 Pfam Protein kinase domain 252 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3071 445 Pfam Protein kinase domain 39 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3071 445 ProSiteProfiles Protein kinase domain profile. 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3071 445 Gene3D Transferase(Phosphotransferase) domain 1 92 413 - -
Lja4g3071 445 CDD STKc_SRPK 27 413 - -
Lja4g3071 445 Gene3D Phosphorylase Kinase; domain 1 24 123 - -
Lja4g3071 445 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
Lja4g3071 445 SMART serkin_6 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3071 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Lja4g3071 445 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 5 445 - -
Lja4g3071 445 SUPERFAMILY Protein kinase-like (PK-like) 32 415 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3071 Lja-Chr4 58228332 58232691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3071 4 428 EF-hand Containing Proteins AT5G22840 50.105 2.77e-165 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Lja4g3071 Pkinase 1.8e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3071 K08832 - gmx:100814976 761.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3071 4 58228332 58232691 Lja4g3071 4 58228332 58232691 ECH