Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3068 ATGGCCAATAAAGTTCATGCCCATAATAAGAGACAAAATGGCGGACTGGAATATTTCGGCAATAACGTGAAGCTGCAATTAGAAACATCTCAGATCCACTATCTCGAAAGAGAATTACCTTACTCATGTCAAGTAGAGGATGACTGGTCAAAGATAAATAGTTACTTGGCTTCAGTGAAAATACAGAACAATGAGAAGCTATCCAAAAAATCAGGCACCAGAAGTAATGCACCAAGCCTTGTGGCAAGGTTGATGGGGATGGACATGATGCCATTAGACACTAAATCTGTAGTTCCATCAGATGAAAGCATAAGTGAAAACATGGTATTTGATCCATTCTACCAAGACATTGAAGATGATGGATGGGGACAGAATTATGGAAAACCAAGACCAAGGGAACATCCTCAGGAAGAGGAATTCCAGACATTCAAGAAAGAATTTGAAGAATATCAAGCAGCAAGATTTAAGGAGTGTTTGAAGGATTCTGGAACTGGAAGTATTTCTAGCCAAATGCATGCTCAAGAGAGTCTCAACAAGGAAATGGTGCCACATTATGAAAGCTCACAGAGAGAGGCAACAGAGAAATCTGCAGAGCTAGATAGTCACTTATTTAAAACTAAGCTACCTAATGATGACATGATGAATTTAAGGGATAGAACACTGAGTAGAGACTTTGAGGAGTCTCTAATACTGAACACTAGAAGCAGATTAGATATATGTTCTTCTCCCTCTCAGATAGTTATCTTGAAGCCTAGTGCTGATAGTATTTACAATTGCTACCATAAAGACAATGGGACCAGTTCATCAGGAACTTTACAAGGGAGAGGTAGTATAGAAGAATTTCTTGAGGAGGTAGGAGAGCGTTTGAAATGTGAGATGCAAGGGAAATCTGTCAAAAAGGGTTCTGCGGGTCGAGGAAGTGGAATTGAAACACCTTACTATGAAAAACTATCTGATCCTAAAGAAATAGCTCATTATATAGCACAAGAGGTCAGAGAAAGTGTGACTAGAGATGCAGAAGTGACTTTGATCCGCTCAAAATCCACACAAAAGCCTTTTTCTACTAGGTGGAGTCGGATACCGGAATTTTTCAACAGAGATACCAGGAATTTTTTCACAAAGAGGCTAAGAAATGTTATGAAAAATGAAGCACTTTTTGACATTCCTGAAATGAGTTGTGGGAACTCAAGGTCATATATACTAGACAATCACTGTGATATTTTGAAAGAGAGACAAGAAATTCAAACAGGGTCCTTCAGGCATGAAATAGATAACAACTCATTTCTCCACAAGGAGTTGTCTTCTCAGAAACTTGTAAGATCCTTATCTGCTCCAGCTGTATCAAGAAGAGCATTTGAGAAACTTGAAGCTGTTGAAACAATGCCGGTCAAGGTTAAAAAAAAGAAGAAAGATAAATTTAAGTTTAAAGAAAAAGTTTCCAGTTTTAAACATGCTTTTGATCTGAGAAGAAAGCTGTTCGGAAGCAGGGTTCATTCAATGGTAGAATCACACTGCAATGAATATGATCCCTTGGTGAGAGATATCAGAAGTGGACCAACTGTTCTCTTGAAATATGGCGAGAGGCATGAGAACTCCACTGAGGTACCACCTAGTCCTGCATCTATGTGCAGCCTTGCTCAGGAAGAACTTTGGGCACAGACTGAATATTTAAGTCCAATATCAACTCCAGATGTATCTTCAATAGACAATGTTGCTATGCCGAAGGATTTTAGAGATACCATTTCTGGTTTGAAAGAGCTAAGGAGGCAAATCAGTCAACTTGAGTCTGATAGCCCTGAGGACCTAACGAAAAAGCAAGAGCATCTTGAATCTGAATTCGTTCTGTTGGAAGATCCAGAAGAATCTTATGTAAGAGATCTGCTTGTTGCATCCGGTCTGTATTTCGGCTCGTGGGTAAAGTCTTTGTCAAAAGGGGACACATTTGCAAAGCAAATTGGCAACTCAGATTTTGAAGAAGTGGAAGAATCTCATAAGAAACTGATCAAGGAGAATGTAAGATCTATGAAGGATCAGAATGAGAGTAAGTTAGAGCACATGGTTTTACTTGATTTGTTAAATGAGGCACTTTCCATTGTTCTTGGACCACCTTTGACATTGTCTAGATTCAAAAGGATGCTAAGCAACTCCTCCATGGACCCTCCACCAAATGGAAAAGAACTACTGAAATTAGTATGGGACATTATCTCTGTTTCTCTACATCCTTCATCTAACACACCTTATTCACAAGACCTGAGATCCATCTCCTGGTATGAACTAATAAATGATCAGATCAATGTATTAGAAAGAGAGATAGCATATCTAATCGCTGATGATTTGATTGAAGAATTCACGAACAATATGCTCTTAGGTACACTGTAA 2379 0.388 MANKVHAHNKRQNGGLEYFGNNVKLQLETSQIHYLERELPYSCQVEDDWSKINSYLASVKIQNNEKLSKKSGTRSNAPSLVARLMGMDMMPLDTKSVVPSDESISENMVFDPFYQDIEDDGWGQNYGKPRPREHPQEEEFQTFKKEFEEYQAARFKECLKDSGTGSISSQMHAQESLNKEMVPHYESSQREATEKSAELDSHLFKTKLPNDDMMNLRDRTLSRDFEESLILNTRSRLDICSSPSQIVILKPSADSIYNCYHKDNGTSSSGTLQGRGSIEEFLEEVGERLKCEMQGKSVKKGSAGRGSGIETPYYEKLSDPKEIAHYIAQEVRESVTRDAEVTLIRSKSTQKPFSTRWSRIPEFFNRDTRNFFTKRLRNVMKNEALFDIPEMSCGNSRSYILDNHCDILKERQEIQTGSFRHEIDNNSFLHKELSSQKLVRSLSAPAVSRRAFEKLEAVETMPVKVKKKKKDKFKFKEKVSSFKHAFDLRRKLFGSRVHSMVESHCNEYDPLVRDIRSGPTVLLKYGERHENSTEVPPSPASMCSLAQEELWAQTEYLSPISTPDVSSIDNVAMPKDFRDTISGLKELRRQISQLESDSPEDLTKKQEHLESEFVLLEDPEESYVRDLLVASGLYFGSWVKSLSKGDTFAKQIGNSDFEEVEESHKKLIKENVRSMKDQNESKLEHMVLLDLLNEALSIVLGPPLTLSRFKRMLSNSSMDPPPNGKELLKLVWDIISVSLHPSSNTPYSQDLRSISWYELINDQINVLEREIAYLIADDLIEEFTNNMLLGTL* 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3068 792 Pfam Domain of unknown function (DUF4378) 621 782 IPR025486 -
Lja4g3068 792 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 1 788 - -
Lja4g3068 792 Pfam DUF761-associated sequence motif 71 91 IPR032795 -
Lja4g3068 792 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 1 788 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3068 Lja-Chr4 58159947 58164284 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3068 65 787 TRM (TON1 Recruiting Motif) Superfamily AT2G17550 35.377 1.03e-103 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3068 - - lja:Lj0g3v0203309.1 967.222