Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3059 ATGGGTCACTGCTTTTCCTCTCTCTCACGCTCTGCACCTGCATCTTCTTCCTTCAACAAGCCTCAATACTCAGCTTCAGCTTCAGCGAGCACTGACAGCAAGAACGTGGGGTTCTCCACCACAACGAGCACTTTTGGGAAGAGCCAGTTCTCGGAGATAGCGAGTGGAAGCAGCAGCTTTGGCGGTGGAGAATCAGGGTCTCTTCCTCATCTTTCACTGTATGGCCAGATTTTGGATAGGCCAAATTTGAAGGAGTTCAGTTTCTCTGACTTGAAATCTGCCACCAAGAGCTTCAAATCCGACACGTTGGGTGAAGGTGGGTTTGGGAGAGTTTACAAGGGTTGGTTGGATGAGAAGACGCTTGCACCGGCCAAAGCAGGCTCTGGAATGGTGGTTGCTATTAAGAAATTGAACCCTGAAAGCACACAAGGGTTTCAAGAATGGCAGTCAGAAATCAACTTTCTAGGGAGGCTTTCTCACCCCAATTTGGTTAAGTTATTGGGTTACTGTTGGGAGGATGACAACCTTCTTCTTGTGTATGAGTTTATGCCAAAGGGAAGCTTGGAAAATCATCTATTCAGAAGAAATCCAAAGATAGAACCACTTTCTTGGAACACCCGAATTAAAATAGCTATTGGTGCCGCTCGGGGCTTGGCTTTCTTGCACACTTCTGAAAAAGTCATCTATAGAGATTTCAAGGCCTCAAATATACTGCTCGATGGGGATTACAATGCAAAAATCTCAGATTTTGGCTTGGCTAAATTGGGGCCGGCTGGGGGACAATCCCATGTAACTACCAGGGTAATGGGCACGTATGGTTATGCTGCTCCGGAATACATCGCAACTGGGCACTTGTATGTGAAGAGCGATGTGTACGGGTTCGGTGTGGTGCTGCTTGAAATTCTCACAGGCATGCGAGCACTGGATACTACTAGAAGACCAACAGGGCAACAGAACCTGGTTGAATGGGTAAAGCCAACCTATCTCTCCAACAAAAATAAGTTGAAAACCATTATGGATGCTAAGATACAGCGCCAATATTCACCAAAGGCTGCATTCCAAACAGCACAGCTTATTCTAAAGTGCCTTGAAAATGACCCTAAACATCGTCCTTCTATGAAAGATGTGCTTGACACATTGGAAGCCATTGAAGCTATTAAGGTCAAGTCTAAGGAACCCAAGAATTCCCATTCTCAGCAACCTCCAATTCATGCCCGACACAGAGTTGTAAAAGTATAA 1239 0.4568 MGHCFSSLSRSAPASSSFNKPQYSASASASTDSKNVGFSTTTSTFGKSQFSEIASGSSSFGGGESGSLPHLSLYGQILDRPNLKEFSFSDLKSATKSFKSDTLGEGGFGRVYKGWLDEKTLAPAKAGSGMVVAIKKLNPESTQGFQEWQSEINFLGRLSHPNLVKLLGYCWEDDNLLLVYEFMPKGSLENHLFRRNPKIEPLSWNTRIKIAIGAARGLAFLHTSEKVIYRDFKASNILLDGDYNAKISDFGLAKLGPAGGQSHVTTRVMGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEILTGMRALDTTRRPTGQQNLVEWVKPTYLSNKNKLKTIMDAKIQRQYSPKAAFQTAQLILKCLENDPKHRPSMKDVLDTLEAIEAIKVKSKEPKNSHSQQPPIHARHRVVKV* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3059 412 ProSitePatterns Protein kinases ATP-binding region signature. 103 136 IPR017441 GO:0005524
Lja4g3059 412 PANTHER SERINE/THREONINE-KINASE CX32, RELATED PROTEIN 52 395 - -
Lja4g3059 412 Gene3D Phosphorylase Kinase; domain 1 82 182 - -
Lja4g3059 412 PANTHER OS01G0588500 PROTEIN-RELATED 52 395 - -
Lja4g3059 412 MobiDBLite consensus disorder prediction 390 412 - -
Lja4g3059 412 ProSiteProfiles Protein kinase domain profile. 97 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3059 412 SUPERFAMILY Protein kinase-like (PK-like) 77 381 IPR011009 -
Lja4g3059 412 Gene3D Transferase(Phosphotransferase) domain 1 183 405 - -
Lja4g3059 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Lja4g3059 412 CDD STKc_IRAK 103 383 - -
Lja4g3059 412 Pfam Protein tyrosine and serine/threonine kinase 101 380 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3059 Lja-Chr4 57984154 57988703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3059 86 380 Glycoside Hydrolase AT3G07070 51.678 2.14e-98 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lja4g3059 PK_Tyr_Ser-Thr 5.7e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3059 - - gmx:100794193 598.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3059 4 57984154 57988703 Lja4g3059 4 57984154 57988703 ECH