Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3052 ATGGGAGGTGACGGTGCCGGTGAGGAATCGAAAGGTGCCGAAGAGGTCAACATCAACGTTCGCTGCTCCAACGGTTCCAAGTTTTCAGTTCAGGTTTCCCTCAATTCCGCCGTCGGATCCTTCAAGGATCTCGTTGCTCGCAACTGCGACATCCCCGTCGAACAACAGCGCCTCATTTACAAGGGTCGGATCTTGAAGGACGATCAAACCCTTCAGAGCTACGGTTTGGAGGCAGATCACACTGTCCATTTGGTACGTGGCTTTGCACCTACCAATACAACTGGTGGGACCAACAGTGGTGGCACCAATACCACAACGGATAATGCTAGAGGTGCTGGTGCTAATGATGGTGGGGGTTTAGGAGGGCTTGGTTTTGGAGCTTCCCTGTTCCCTGGACTAGGTATCAATGGCACTGGGGGAAATGGCTTATTTGGTGACGGACTTCCGAATCTTGAACAAATGCAGCAACCATTTATTTCAAATCCCAATTTGGTGAGAGAAATAATGAACACACCTGCTATGCAGAATCTAATAAATAATCCTGAGATAGTGCGGAATCTTATAATGAGTAACCCACAGATGCAAGAGCTCATGGATCGAAACCCTGAGCTAGCACACATACTTAATGACCCCAGCACTCTTCGCCAGACTCTTGAAGCTACAAGGAATCCCGAGATCATGCGTGAAATGATGAGAAATACTGACAGAGCTATGAGCAACATTGAATCTTCTCCTGAGGGATTCAACATGCTGAGGCGCATGTATGAGAATGTTCAAGAACCATTTTTAAATGCCACTACAATGGGTGGTAATGCGGGAAATAATGATACAGCAATTTCTGGGACTCAGGGTGGCCAAGTCAGGGATCAATCAACTAATCCCTCAACTGCTAATTCTGAAACAACTGGTGGTTCTCCTGTACCCAATACTAACCCGCTTCCTAATCCTTGGTCCTCTACTAGAACTGGACCTGCCCCACCAAATAATACTAGAAGATCAACTGCTGGCGGGGATACTAGACAACAAACACCTACTGGCTTAGGAGGGCTTGGTATGCCGGACCTTGAAGGCATGTTGGGTGGCAGTGGTATGCCAGATGCTGCTTCATTGGCCCAGTTAATGCAAAATCCAGCTATCTCACAAATGATGCAAAGTATCCTTTCCAACCCACAAACATTGAATCAGATTCTTGGGACTAATACTGAACAGCGTGGCATGCCTGATTTAAATTCTCTTAGAGAAGTGATGCGGAATCCAGAGTTCCTTCGCATGTTTTCTTCACCTGAGACAATGCAGCAACTCATGTCTCTCCAGCAATCTCTTTTGTCTCAGCTTGGTCAGCAACAACCAACACAGGAATCAGGTCAAACTGGTGGAGGCACTGGACCATTGAACAACTTGGGGTTGGAGATGTTATCGAGCATGTTTGGTGGACTTGGAGCTGGTAGTCTAGCTGTTCCAAATAGATCAAATGAGGCCCCGGAGCAATTGTATGCCACCCAGCTTTCACAGCTTCAAGAGATGGGGTTTTTTGACACTCAAGAGAACATAAGGGCACTTATTGCTACATCAGGGAATGTTCATGCAGCAGTTGAACGGCTTTTGGGAAACTCTGGTTAG 1620 0.4691 MGGDGAGEESKGAEEVNINVRCSNGSKFSVQVSLNSAVGSFKDLVARNCDIPVEQQRLIYKGRILKDDQTLQSYGLEADHTVHLVRGFAPTNTTGGTNSGGTNTTTDNARGAGANDGGGLGGLGFGASLFPGLGINGTGGNGLFGDGLPNLEQMQQPFISNPNLVREIMNTPAMQNLINNPEIVRNLIMSNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMGGNAGNNDTAISGTQGGQVRDQSTNPSTANSETTGGSPVPNTNPLPNPWSSTRTGPAPPNNTRRSTAGGDTRQQTPTGLGGLGMPDLEGMLGGSGMPDAASLAQLMQNPAISQMMQSILSNPQTLNQILGTNTEQRGMPDLNSLREVMRNPEFLRMFSSPETMQQLMSLQQSLLSQLGQQQPTQESGQTGGGTGPLNNLGLEMLSSMFGGLGAGSLAVPNRSNEAPEQLYATQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNSG* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3052 539 SMART CBM 191 230 IPR006636 -
Lja4g3052 539 SMART CBM 399 434 IPR006636 -
Lja4g3052 539 SMART CBM 141 178 IPR006636 -
Lja4g3052 539 SMART CBM 343 396 IPR006636 -
Lja4g3052 539 SMART ubq_7 16 87 IPR000626 GO:0005515
Lja4g3052 539 Pfam UBA/TS-N domain 498 534 IPR015940 -
Lja4g3052 539 CDD UBA_PLICs 498 536 - -
Lja4g3052 539 Gene3D - 6 100 - -
Lja4g3052 539 MobiDBLite consensus disorder prediction 441 466 - -
Lja4g3052 539 SUPERFAMILY Ubiquitin-like 8 102 IPR029071 -
Lja4g3052 539 PANTHER UBIQUILIN 9 539 - -
Lja4g3052 539 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 492 537 IPR015940 -
Lja4g3052 539 Pfam Ubiquitin family 18 85 IPR000626 GO:0005515
Lja4g3052 539 SUPERFAMILY UBA-like 494 536 IPR009060 GO:0005515
Lja4g3052 539 MobiDBLite consensus disorder prediction 265 346 - -
Lja4g3052 539 CDD Ubl_Dsk2p_like 16 88 - -
Lja4g3052 539 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 9 539 - -
Lja4g3052 539 MobiDBLite consensus disorder prediction 265 363 - -
Lja4g3052 539 Gene3D - 186 244 - -
Lja4g3052 539 SMART uba_6 498 536 IPR015940 -
Lja4g3052 539 Gene3D - 480 539 - -
Lja4g3052 539 MobiDBLite consensus disorder prediction 441 463 - -
Lja4g3052 539 ProSiteProfiles Ubiquitin domain profile. 16 85 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3052 Lja-Chr4 57863942 57870520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3052 16 85 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 31.429 1.43e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3052 K04523 - gmx:100776447 792.341