Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3051 ATGGTGAATTTGAAGGAGAACAATTCCAAGGCGACCACCATGCCCAAAAATCTCCAAGGAGGGGTGAATCGAATGGGTACCAAAGCGACTGGACAAAATCGGAAAGCTTTGAGCGCTATTAATGAAAATCTGGTTCAAGGTCGATCTTACCCTTGCGTTGTCAATAACAAGAGGGCGTTGTCTGGTAAGCATGAGATTGTTGAAAAGAAGCAGGCTGATCTAGCGCATCGACCCATCACAAGGAGGTTTGCTGCACAATTGGCTAGCGCTAAAATATCTTTAGCTGAGATAACCAAGAAGGGATCTGCTGAGTCCAAGTCCATCAATGATGAACCAGTGACAATGTCTTTGGAGAAAACTAAAACATTGCATAGTGGTCCAGATCCTATGGAAGAAGTTGAGATGGAGGACATAAAAGAAGAGTCTATTATGGACATTGATGGTTGTGATGCAGATAACCCTCGTGAAGCAGTGGAGTATATTGAGGATATCTATTCTTTTTACAGAAAAATTGAGACCATTAGCCGTGTTTCACCAAATTATATGGAGCAACAGATGGACATTAACCCAAATATGAGGGCTATACTAATTGACTGGCTTATTGAGGTGCATGACAAATTCGATCTCCTGCAAGAGACATTGTTTCTTACAATCAATCTCATAGACAGATTCTTGGCAAAACAAGAATTGGTGAGAAACAAGCTTCAATTGGTTGGTCTAGTTGCCATGCTTTTGGCATGCAAATATGAGGAGGTTTCTGTGCCTATAGTTTCGGATATGGTGCAACTCTCAGACAAGGCATACACAAGGAGCCAAGTGCTAGAAATGGAGAAGATGATGCTAAACACATTGCAGTATAACATGTCGGTGCCAACTGTGTATGTTTTTCTGAGAAGATTTCTGAAGGCAGCTCAAGCAGATAAAACACTTGAGCTGCTAGTTTTCTTCTTGGTGGAGCTATCTCTGGTGGAATATGAGATGTTGAAATTCCCACCATCTATGGTGGCTGCTGCTGCTGTCTACACAGCTCAATGCACTGTCAATGGCTTCAAAGAATGGAGCAAGACTTGTGAATGGCACACAAAGTACTCAGAGGCTCAGCTATTAGAGTGCTCTACTTTGATAGTTGGGTTCCACCAGAGGGCTAGGTTAGGGAAACTCACTGGAGTGTATAGGAAATACTGCTCATCAAAATTCGGCTTTGCTGCGAAATGTTATAACCCGGCTTATTTTCTTCTGGAGAACGAATTGTGA 1254 0.4234 MVNLKENNSKATTMPKNLQGGVNRMGTKATGQNRKALSAINENLVQGRSYPCVVNNKRALSGKHEIVEKKQADLAHRPITRRFAAQLASAKISLAEITKKGSAESKSINDEPVTMSLEKTKTLHSGPDPMEEVEMEDIKEESIMDIDGCDADNPREAVEYIEDIYSFYRKIETISRVSPNYMEQQMDINPNMRAILIDWLIEVHDKFDLLQETLFLTINLIDRFLAKQELVRNKLQLVGLVAMLLACKYEEVSVPIVSDMVQLSDKAYTRSQVLEMEKMMLNTLQYNMSVPTVYVFLRRFLKAAQADKTLELLVFFLVELSLVEYEMLKFPPSMVAAAAVYTAQCTVNGFKEWSKTCEWHTKYSEAQLLECSTLIVGFHQRARLGKLTGVYRKYCSSKFGFAAKCYNPAYFLLENEL* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3051 417 SMART cyclin_7 295 377 IPR013763 -
Lja4g3051 417 SMART cyclin_7 198 282 IPR013763 -
Lja4g3051 417 SUPERFAMILY Cyclin-like 152 288 IPR036915 -
Lja4g3051 417 Gene3D - 163 403 - -
Lja4g3051 417 PANTHER CYCLINS 27 410 IPR039361 -
Lja4g3051 417 CDD CYCLIN 289 376 IPR013763 -
Lja4g3051 417 Gene3D - 177 289 - -
Lja4g3051 417 SMART Cyclin_C_2 291 408 IPR004367 -
Lja4g3051 417 Pfam Cyclin, N-terminal domain 163 289 IPR006671 -
Lja4g3051 417 CDD CYCLIN 192 281 IPR013763 -
Lja4g3051 417 MobiDBLite consensus disorder prediction 1 24 - -
Lja4g3051 417 ProSitePatterns Cyclins signature. 193 224 IPR006671 -
Lja4g3051 417 SUPERFAMILY Cyclin-like 290 407 IPR036915 -
Lja4g3051 417 PIRSF Cyclin_A_B_D_E 2 416 IPR039361 -
Lja4g3051 417 Pfam Cyclin, C-terminal domain 291 405 IPR004367 -
Lja4g3051 417 PANTHER CYCLIN-B2-1 27 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3051 Lja-Chr4 57843085 57847008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3051 6 413 Core Cell Cycle Gene Families AT1G20610 53.349 4.36e-154 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3051 K21777 - gmx:100779889 550.821