Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3039 ATGACTCGCACGCTTAGAATCCTCCAAGCCTCAAACGACGCCGTTTCGGCACCGCCGCCGGATACCGCCGCAAACAAGGAGTCAGACTTCGTTGTCATCATGGCAGCACTCCTCTGCGCCCTCATATGCGTCGTCGGCCTCACCGCCATCGCACGCTGCGCCTGGCTCCGCCGTGGACCCGTCGCCGCCGGCGACGGAACCCCGCCGCGGCGGGCATCCGCCGACAAGGGCCTCAAGAAAAAGGTGCTGGAAGCGTTACCGAAGTTCACCTACGTCGACGGAGGCGGCACCGGAAAGTGGGTGGCCTCGTCGGAGTGCGCCATTTGTCTGTCGGAGTTTGCCGCCGGCGAAGAGGTCCGGTCGCTGCCCCAGTGCGGCCATGGCTTCCACGTCCCCTGCATCGACACGTGGCTCGGGTCCCACTCCTCGTGTCCCTCCTGCCGCGCTCCCTTCCGCGTCGCCCGGTGCCAGAAATGCGGCCAGTATCCGGTGGTGTCCGCCGGAGCTGCTGCCACCTCCACCGTTGGCGGCGAAACGGAGGCCAAGTCCGTAGGTGGCGGCAATGTCCTTGCAGCTGCTGCTAATGCTATCACTGATTGTGATGGTAGCGACGACAGCCATAGCCACGGTGATGATAGTGGTTTCTTGCCTTGA 654 0.6437 MTRTLRILQASNDAVSAPPPDTAANKESDFVVIMAALLCALICVVGLTAIARCAWLRRGPVAAGDGTPPRRASADKGLKKKVLEALPKFTYVDGGGTGKWVASSECAICLSEFAAGEEVRSLPQCGHGFHVPCIDTWLGSHSSCPSCRAPFRVARCQKCGQYPVVSAGAAATSTVGGETEAKSVGGGNVLAAAANAITDCDGSDDSHSHGDDSGFLP* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3039 217 Pfam Ring finger domain 105 148 IPR001841 -
Lja4g3039 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 153 IPR013083 -
Lja4g3039 217 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 1 180 - -
Lja4g3039 217 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Lja4g3039 217 SUPERFAMILY RING/U-box 105 153 - -
Lja4g3039 217 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 180 - -
Lja4g3039 217 SMART ring_2 106 147 IPR001841 -
Lja4g3039 217 CDD RING-H2_PA-TM-RING 105 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3039 Lja-Chr4 57279541 57280418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3039 1 159 C3H Transcription Factor Family AT1G20823 58.580 5.59e-56 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3039 - - lja:Lj0g3v0170279.1 306.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3039 4 57279541 57280418 Lja4g3039 4 57279541 57280418 ECH
Lja2g0649 2 5821799 5823065 Lja4g3039 4 57279541 57280418 ECH
Lja4g3039 4 57279541 57280418 Lja4g3039 4 57279541 57280418 PCT