Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3021 ATGGTTGATAATGGTCGTGTACCGTGTATCTCCCCAACCTCTGAGAATGGCTCTTTAGAGCCCAAACAAAACCCTACACCACCCTCCCAACCACAACCACAACCCACCAATGAGAACCCTATCATTCTGGAGGAGGAAAACACTACACCACTCTCTAAGAGACCAAGGGGAAGGCCCTCTGGCTCTAAGAACAAGCCCAAATCACCAATCATTGACGACAACCTCCATACCGTCGTATTTCAAATCCCTCCTGGAAATGATATCATTGCTTGTCTCATCAACTTTGCACGCTGCCATCAAGTTAACCTCACTGTCCTTAGTGCTTCTGGCATTGTGTCAGACATTCATGTTCGCCATCCTCATGTTCTCTATGGCCCTTCTTTGATCTACCGCGGACTCCACTCAATGATTTCTCTAAATGGAACCTACATGAATTTTCAATTCCCTTCCATCACCAATGAACCTACCTATGAGAAGAACTTCACTATTAACCTTTCGGGGAGCCATGGTACAGTTTGTGCTGGGATTGTTGCAGGGAAGGTCATGGCTGCAGGTCCTGTAGTGGTCAACGCCTTAGTGTTTAAGAACTTTGGTTGCAGGGCATTCTGCAACGATGGAAACATGCTGATTGAGGAAGGCGGAGTGCTTTCTTGTTTTTTCAATGATCAAAATTCAAGCAGTTCTACTAGCTCAGTGGGCAGCAACACAAACAGTGCATAG 720 0.4611 MVDNGRVPCISPTSENGSLEPKQNPTPPSQPQPQPTNENPIILEEENTTPLSKRPRGRPSGSKNKPKSPIIDDNLHTVVFQIPPGNDIIACLINFARCHQVNLTVLSASGIVSDIHVRHPHVLYGPSLIYRGLHSMISLNGTYMNFQFPSITNEPTYEKNFTINLSGSHGTVCAGIVAGKVMAAGPVVVNALVFKNFGCRAFCNDGNMLIEEGGVLSCFFNDQNSSSSTSSVGSNTNSA* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3021 239 ProSiteProfiles PPC domain profile profile. 72 216 IPR005175 -
Lja4g3021 239 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 20 203 IPR014476 GO:0003680
Lja4g3021 239 MobiDBLite consensus disorder prediction 9 23 - -
Lja4g3021 239 Pfam Plants and Prokaryotes Conserved (PCC) domain 77 195 IPR005175 -
Lja4g3021 239 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 20 203 - -
Lja4g3021 239 MobiDBLite consensus disorder prediction 1 70 - -
Lja4g3021 239 Gene3D - 75 208 - -
Lja4g3021 239 SUPERFAMILY AF0104/ALDC/Ptd012-like 75 200 - -
Lja4g3021 239 CDD DUF296 77 189 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3021 Lja-Chr4 56537105 56537824 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3021 54 196 AT-hook Motif Nuclear Localized (AHL) Family AT1G14490 38.095 5.31e-25 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3021 - - lang:109328424 134.035