Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3019 ATGGTTGAAAATGGTTGTGTACCATGTATCTCCCCAACCTCTGAGAATGGTTCCTCAGATCCCAAGCAAAACCCTACACCACCCTCCCAACCACAACCACAACCCACCTATGAGCCCCCCACCATTCCGCAGGAGGAATTGAACACTCCACCACCGTCTAAGAAACCAAGGGGAAGGCCCCTTGGCTCTAAGAACAAGCTCAAATCACCGATCATCAACAACAACCTCAAGCCCGTCGTATTTCAAATCCCTCCTGGAAACGATGTCATTGCATCCCTCATCAACTATGCCCGCTGCCATCAAGTTAACCTCACTATCCTTAGTGCTTCTGGCATTGTGTCAGACATTCATATTTGTCATCCTTTTGCAAGCTATGGCCCTCCTTTAATCTACCGCGGACTCCATATGATGCTTTCTCTTAGTGGAACCTACATTAATTTTCATTTACCTTACTCTCGTTCCACCGCTAATGAACCTCCATATCAGAACAACTTCACTATTCACGTATCTGGGAGTCAGGGTGCGGTCTGGAGTGGGATTGTTGCAGGGAAGGTCCTGGCTGCGAGTCCTATAGCGGTCAACGCCTTAGTGTTCAAGAACTTTGGTTACAAGGCATTATACATCGATGGAAACATGTTGACTGAGGAAGGCGGAGTGCTTTCCTCTTCTGATAATGATCAAAATTTAACTGGTTCCACTAGCATAGTGGTCAACAACACAAACAATGCGTAG 732 0.4672 MVENGCVPCISPTSENGSSDPKQNPTPPSQPQPQPTYEPPTIPQEELNTPPPSKKPRGRPLGSKNKLKSPIINNNLKPVVFQIPPGNDVIASLINYARCHQVNLTILSASGIVSDIHICHPFASYGPPLIYRGLHMMLSLSGTYINFHLPYSRSTANEPPYQNNFTIHVSGSQGAVWSGIVAGKVLAASPIAVNALVFKNFGYKALYIDGNMLTEEGGVLSSSDNDQNLTGSTSIVVNNTNNA* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3019 243 Pfam Plants and Prokaryotes Conserved (PCC) domain 77 199 IPR005175 -
Lja4g3019 243 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17 209 - -
Lja4g3019 243 SUPERFAMILY AF0104/ALDC/Ptd012-like 74 207 - -
Lja4g3019 243 MobiDBLite consensus disorder prediction 9 23 - -
Lja4g3019 243 MobiDBLite consensus disorder prediction 24 57 - -
Lja4g3019 243 MobiDBLite consensus disorder prediction 1 69 - -
Lja4g3019 243 CDD DUF296 77 187 IPR005175 -
Lja4g3019 243 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 17 209 IPR014476 GO:0003680
Lja4g3019 243 ProSiteProfiles PPC domain profile profile. 73 220 IPR005175 -
Lja4g3019 243 Gene3D - 76 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3019 Lja-Chr4 56432007 56432738 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3019 54 206 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 33.962 7.30e-23 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3019 - - lja:Lj1g3v1091170.1 134.035