Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3018 ATGGGAGCAGTTTCTTCCGGTGGTGATAACATATGGAAGGCTCACACGGCGATGGCGGTGGTGCAGCTTTTCACCGGAGGCTACCATGTCATCACAAAGCTTGCTCTCAATGTTGGCGTCAACCAAATCGTCTTCTGCGTCTTCCGTGATCTCCTTGCTCTCTCCATTCTCGCTCCACTCGCTTATTTCCGTGAAAAACGTACAAGGCCACCCCTAACCAAGCGCATCATGATGTCATTCTTCTTTCTTGGATTAACTGGGATATTTGGCAACCATCTTTTGTTTCTTATTGGTTTAAGCTATACTAATCCAACTTATGCTGCTGCAATTCAGCCAGCCACTCCAGTCTTTACATTTCTGTTGGCTGTAATGATGGGTACAGAAAGAGTGAACATGCTAAGATATGAAGGTCTGGCCAAGGTTGGAGGAATTTTTACCTGTGTTTTGGGTGCCATATTTATGGTTTTGTATCGTGGTCCGGCATTGATTGGATATACAGAAATAGACCTTGAATCACACAGTGAAGTAAGTGCGAGAGGTCAACCAGAGCCTTCTGGATGGTTAATTAGTGGTTTAATGGGTCTTGGATTAGACCATTTTCATATCGGGGTTTTGTGCTTCATTGGGAACTGCATGTGCATGGCTACTTTTCTAGCCATTCAGGCTCCATTATTAAAAAAGTATCCTGCAAACCTAACAGTCACGGCCTATTCATACTTCTTTGGAGCTTTACTGATGGTAACCACATCGTACTTTGTGACTGATGAGTCAACTGACTGGAGTTTGACACAATCTGAAACAATTGCTGTTTTTTATGCTGGAATTATTGCATCTGCCCTTAATTATGGAATCATTACATGGTGTAACAAGATCTTGGGGCCGGCCATGGTTGCCCTTTATATTCCACTTCAACCTGGGGCTTCTGCTCTCTTGTCCAGAATTTTTCTTGGAAGTTCAATTTACATGGGAAGCGTTGTTGGTGGATCATTGATCATTACTGGTTTATATGCGGTTACTTGGGCATCTTATAGAGAAAGGAAGGCAGCTGCTGGAGTTATTCCTCTTGGCTCTTGGGTCCCTGAATCACCTATTCATGACAAGAAGAGTCCATACCATAGAGCACTTCACATTTTCTCAGGCCTCCCCGGCTTTTCCACAAAGCCTTCGGATTAA 1173 0.4373 MGAVSSGGDNIWKAHTAMAVVQLFTGGYHVITKLALNVGVNQIVFCVFRDLLALSILAPLAYFREKRTRPPLTKRIMMSFFFLGLTGIFGNHLLFLIGLSYTNPTYAAAIQPATPVFTFLLAVMMGTERVNMLRYEGLAKVGGIFTCVLGAIFMVLYRGPALIGYTEIDLESHSEVSARGQPEPSGWLISGLMGLGLDHFHIGVLCFIGNCMCMATFLAIQAPLLKKYPANLTVTAYSYFFGALLMVTTSYFVTDESTDWSLTQSETIAVFYAGIIASALNYGIITWCNKILGPAMVALYIPLQPGASALLSRIFLGSSIYMGSVVGGSLIITGLYAVTWASYRERKAAAGVIPLGSWVPESPIHDKKSPYHRALHIFSGLPGFSTKPSD* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3018 390 SUPERFAMILY Multidrug resistance efflux transporter EmrE 260 345 - -
Lja4g3018 390 PANTHER WAT1-RELATED PROTEIN 12 369 - -
Lja4g3018 390 PANTHER WAT1-RELATED PROTEIN 12 369 IPR030184 GO:0016021|GO:0022857
Lja4g3018 390 Pfam EamA-like transporter family 202 339 IPR000620 GO:0016020|GO:0016021
Lja4g3018 390 Pfam EamA-like transporter family 18 138 IPR000620 GO:0016020|GO:0016021
Lja4g3018 390 SUPERFAMILY Multidrug resistance efflux transporter EmrE 49 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3018 Lja-Chr4 56403373 56409589 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3018 12 273 Nodulin-like Gene Family AT3G45870 68.321 2.98e-121 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3018 - - gmx:100781969 666.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3018 4 56403373 56409589 Lja4g3018 4 56403373 56409589 ECH
Lja2g0675 2 6099625 6129613 Lja4g3018 4 56403373 56409589 PCT