Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3012 ATGGAAGATTATAAGCAGCAGAGACCCTCTCAAGAGCTTGTTGCGAAAGACCTGCATGGTGTGGAGTGGAAATTTTGTCATATTTATAGAGGTCAACCAAGGTGGCATCTACTCACTACTGGCTGGAGTATTTTTGTGAGCCAAAAAAATCTTGTTTCTGGTGATGCAGTGCCTTTTCTAAGGGATGAAAATGGAGAACTGAGATTGGGAATCAGAAGATCTGTTCGGCCTAGAAATGGTATTCTTGAATCAATTGTTGGTAATCAGAACTATTATCCCAATATCCTATCTTCTGTGGCAAATGCTATATCCACCAGAAGCATGTTCCATGTTTTCTACAGTCCAAGCACTATGTCTATGACAATTGATAAGAATGAACTTGTGAAACTCCAATGTTGTGAATGGAAACAAATAGGGAACACTTTGGTTTGGACAGAATGA 441 0.3946 MEDYKQQRPSQELVAKDLHGVEWKFCHIYRGQPRWHLLTTGWSIFVSQKNLVSGDAVPFLRDENGELRLGIRRSVRPRNGILESIVGNQNYYPNILSSVANAISTRSMFHVFYSPSTMSMTIDKNELVKLQCCEWKQIGNTLVWTE* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3012 146 CDD B3_DNA 1 73 IPR003340 GO:0003677
Lja4g3012 146 PANTHER AUXIN RESPONSE FACTOR 3 117 - -
Lja4g3012 146 SUPERFAMILY DNA-binding pseudobarrel domain 3 83 IPR015300 -
Lja4g3012 146 Gene3D - 1 75 IPR015300 -
Lja4g3012 146 Pfam B3 DNA binding domain 4 74 IPR003340 GO:0003677
Lja4g3012 146 ProSiteProfiles B3 DNA-binding domain profile. 1 75 IPR003340 GO:0003677
Lja4g3012 146 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 3 117 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3012 Lja-Chr4 56050048 56054520 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3012 3 115 B3 DNA Binding Superfamily AT5G60450 82.301 9.47e-59 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lja4g3012 B3 7.1e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3012 - - ahf:112706773 205.682