Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3004 ATGTTCAGTTCATCCTTTTCCTCTGCAACCTTGTCCACATGCCTTCATGTGGTTCTTCTCTTTTCAGCCACCTTACTATATTTACAACCTGAGAACACTGCTAGTGCCTTAGGAAATGACACAGACCAATTCTCACTGCTAAAATTCAAACAATCAGTAGCTGACGACCCATTTGATGTTTTGTCTACATGGAACACTTCAACTTACTTTTGCAACTGGCATGGAGTCACATGCAGCCTCAGGCATCAAAGGGTAATTGCCCTGAATCTTCAAGGTTATGGCTTAAGTGGGTTAATACCACCTGAGATTGGTAACCTCACCTTCCTGAGACATGTCAACCTTCAAAACAACAGCTTCCATGGTGAAATCCCACACGAAATAGGCCGTTTGTTCCGGCTTCAGGAGCTCTATCTCACCAACAACATATTAATGGGTCAAATTCCCACAAACTTGTCTCACTGTTCTAAACTCAAAAGCTTGAGTTTAACCAGAAACAAACTTGTTGGCAAAATACCAATGGAGCTTGGCTTTCTAACCAAGCTAGAACAACTATCCATTGGTGTGAACAGTTTAACAGGTCCAATCCCTGCATCTATAGGAAACCTTTCATCTCTTATTACTCTCATTTTGGGAGTCAATAACTTGGAGGGAAATTTGCCAGAAGAGATAGGCCATCTGAAAAACTTGACACATCTCTCTATTGGATCCAATAAACTATCTGGTATGCTTCCTTCTGCACTATTTAACATGTCATCTCTCACTTTCTTCTCAGCTGGAGCCAACCAATTTACTGGCTCTCTACCTTCCAACATGTTCCTCACACTCCCTAATCTCCAACAATTTGGGGTTGGTATGAACATGATCTCAGGTCTAATCCCATCTTCCATTTCCAATGCAACAAGTTTGCTGTTATTTAACATCCCCCGGAATAATTTTGTTGGACAAGTTCCAATTGGAATAGGAAACCTCAAAAATATCCTGTCAATTGCCATGGGACGAAATCATCTAGGGAGTAATTCATCAACTGACTTGGATTTCTTGACATCTTTGACAAACTGCACCAACTTACAAGTGTTGGATTTGAATCTAAACAACTTTGGTGGCTCTTTGCCCAGCTCTGTAGCCAATTTTTCAAGTCAGCTAAATCAGTTATATATTGGAGGCAATCAAATTACTGGGAATATTCCCTCAGGATTAGGAAATCTCAACAACTTGATTGGGTTGGACTTGGAGTATAATCTTCTCACAGGAACCATTCCATCTTCTTTTGGGAAGTTCCAAAAGATGCAATCATTGACTCTAAATTTAAACAAACTTTCAGGGGAAATCCCTTCATCCATTGGAAATCTTAGTCAGTTATTTCAACTTGACCTATCAAGTAATTTTCTGGAAGGAAGCATTCCTCCCAGTTTAGGGAATTGCCATGAGTTGCAATATCTCGCCCTTTCACACAACAACCTTACTGGAACTATTCCTCCAAAGGTTATTGGTCTTCCTTCCTTGTCATTGTTACTGAACTTATCTCATAACTCATTGGATGGAAGCCTTCCCTTTGAAGTTGGGAATCTGAAAAGCATTAACAAGTTGGATGCTTCTAAAAATTCTCTGTCTGGTCCAATTCCTTCAACAATTGGACAGTGCATGAGCTTGGAATACCTTAACTTACAAGGAAACTCCTTCCAAGGAGCCATGCCTTCCTCTTTGGCTTCATTAAAAGGCCTCCAGTATCTTGATTTGTCAAAAAACAACTTGTCTGGAACAATTCCAGAAGGCTTGGAGAATATTCCTGAGCTACAATATTTGAATATTTCTTTTAATAGGCTAGATGGTGAAGTACCAACAGAAGGTGTATTTAGAAATTCAAGTGCTTTATCAGTGAAAGGCAACAGTGACCTTTGTGGGGGTATCAAAGAGCTACATCTACCACCATGCAAAGTAATAGGTAGTAGGACACACAAAAAACATCAAGCTTGGAAGGTAATAGTGATAATAATTCTTGTTCTCTTTCTTCTTCTGTTATCACTCTCTGTTGTGATCTTTTGGAAGAAAAAAGCAAACTTGAGAAGTTCTAATTCTCCAACAACAATGGACCATCTTGCTAAGGTCTCGTACCAGACACTCCACCAAGCAACAAATGGATTCTCTCCTAACAACTTGATAGGATCTGGTGCTTTTGGCTTTGTGTATAAAGGAACCTTGGAATCCGAAGAAAGATATGTTGCTATAAAGGTTCTGAACCTTCAAAAGAAAGGAGCTCACAAGAGTTTCATTGCTGAATGTAATGCGCTCAGAAGTATCCGTCACAGGAATCTGGTTAAGATCATAACATGCTGCTCTAGCATGGATTACAACGGAAATGAATTCAAAGCTCTAGTTTTTGAGTTCATGGAAAATGGAAGCTTAGAGATATGGCTGCATCCGGAATCGGAAATTGGACAACAGCCAAGTTTTAACCTTCTTCAGAGACTAAATATTCTCATAGATGTTGGTTCTGCATTGCACTATCTTCACTATGGACCTGAGCAGCCAATTGTTCACTGTGATTTAAAGCCAAGCAATATCCTTCTTGATAATGACCTGGTTGCCCATGTGAGTGATTTTGGACTAGCAAGACTTCTTTATGCCATCAATGGTGTCTCTGATATGCAAACTAGCACAACTGGAATTAAAGGAACTGTTGGGTATGCTCCTCCAGAGTATGGAATGGGAGGGCATGTTTCAATACTGGGTGACATGTATAGTTTTGGAATCCTTGTACTGGAAATACTAACAGGAAGGAAACCCACAGATGAAATGTTTACAAATGGAATGAATCTTCATACTTTTGTGAAGGTTTCTTTGCCAGAAAAACTATTGCAGATAGTGGACTCAGCCCTTCTTCCAATTGAATTAAAACAAGCATCAGCAGAAGAAGAAAAATATAGTGATCAGAACCTGAGCCATATGGATCATGATGATCTGAAAAAGTGCTTACTTGATCTCTTTTGCATTGGTCTTGCTTGTTCAGCAGAATCACCAAAGGGAAGAATGAATATGAAGGATGTCACCAAGGAACTTAATCTAATCAGGAATGCCCTCTCTTTGGATACTTCTGATTAG 3099 0.3963 MFSSSFSSATLSTCLHVVLLFSATLLYLQPENTASALGNDTDQFSLLKFKQSVADDPFDVLSTWNTSTYFCNWHGVTCSLRHQRVIALNLQGYGLSGLIPPEIGNLTFLRHVNLQNNSFHGEIPHEIGRLFRLQELYLTNNILMGQIPTNLSHCSKLKSLSLTRNKLVGKIPMELGFLTKLEQLSIGVNSLTGPIPASIGNLSSLITLILGVNNLEGNLPEEIGHLKNLTHLSIGSNKLSGMLPSALFNMSSLTFFSAGANQFTGSLPSNMFLTLPNLQQFGVGMNMISGLIPSSISNATSLLLFNIPRNNFVGQVPIGIGNLKNILSIAMGRNHLGSNSSTDLDFLTSLTNCTNLQVLDLNLNNFGGSLPSSVANFSSQLNQLYIGGNQITGNIPSGLGNLNNLIGLDLEYNLLTGTIPSSFGKFQKMQSLTLNLNKLSGEIPSSIGNLSQLFQLDLSSNFLEGSIPPSLGNCHELQYLALSHNNLTGTIPPKVIGLPSLSLLLNLSHNSLDGSLPFEVGNLKSINKLDASKNSLSGPIPSTIGQCMSLEYLNLQGNSFQGAMPSSLASLKGLQYLDLSKNNLSGTIPEGLENIPELQYLNISFNRLDGEVPTEGVFRNSSALSVKGNSDLCGGIKELHLPPCKVIGSRTHKKHQAWKVIVIIILVLFLLLLSLSVVIFWKKKANLRSSNSPTTMDHLAKVSYQTLHQATNGFSPNNLIGSGAFGFVYKGTLESEERYVAIKVLNLQKKGAHKSFIAECNALRSIRHRNLVKIITCCSSMDYNGNEFKALVFEFMENGSLEIWLHPESEIGQQPSFNLLQRLNILIDVGSALHYLHYGPEQPIVHCDLKPSNILLDNDLVAHVSDFGLARLLYAINGVSDMQTSTTGIKGTVGYAPPEYGMGGHVSILGDMYSFGILVLEILTGRKPTDEMFTNGMNLHTFVKVSLPEKLLQIVDSALLPIELKQASAEEEKYSDQNLSHMDHDDLKKCLLDLFCIGLACSAESPKGRMNMKDVTKELNLIRNALSLDTSD* 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3004 1032 Gene3D Phosphorylase Kinase; domain 1 694 795 - -
Lja4g3004 1032 Pfam Leucine rich repeat N-terminal domain 40 79 IPR013210 -
Lja4g3004 1032 PANTHER OS04G0122200 PROTEIN 27 1026 - -
Lja4g3004 1032 ProSiteProfiles Protein kinase domain profile. 714 987 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3004 1032 Gene3D Ribonuclease Inhibitor 194 338 IPR032675 -
Lja4g3004 1032 Pfam Protein kinase domain 717 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3004 1032 SMART LRR_sd22_2 226 252 - -
Lja4g3004 1032 SMART LRR_sd22_2 378 404 - -
Lja4g3004 1032 SMART LRR_sd22_2 571 594 - -
Lja4g3004 1032 SMART LRR_sd22_2 426 452 - -
Lja4g3004 1032 SMART LRR_sd22_2 130 153 - -
Lja4g3004 1032 SMART LRR_sd22_2 178 204 - -
Lja4g3004 1032 SMART LRR_typ_2 226 249 IPR003591 -
Lja4g3004 1032 SMART LRR_typ_2 571 594 IPR003591 -
Lja4g3004 1032 SMART LRR_typ_2 402 425 IPR003591 -
Lja4g3004 1032 SMART LRR_typ_2 450 474 IPR003591 -
Lja4g3004 1032 SMART LRR_typ_2 595 620 IPR003591 -
Lja4g3004 1032 SMART LRR_typ_2 106 130 IPR003591 -
Lja4g3004 1032 Pfam Leucine rich repeat 549 608 IPR001611 GO:0005515
Lja4g3004 1032 PANTHER LRR RECEPTOR-LIKE KINASE 27 1026 - -
Lja4g3004 1032 SMART serkin_6 714 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g3004 1032 Gene3D Transferase(Phosphotransferase) domain 1 796 1030 - -
Lja4g3004 1032 SUPERFAMILY L domain-like 379 634 - -
Lja4g3004 1032 Gene3D Ribonuclease Inhibitor 39 193 IPR032675 -
Lja4g3004 1032 ProSitePatterns Serine/Threonine protein kinases active-site signature. 844 856 IPR008271 GO:0004672|GO:0006468
Lja4g3004 1032 Gene3D Ribonuclease Inhibitor 339 645 IPR032675 -
Lja4g3004 1032 SUPERFAMILY Protein kinase-like (PK-like) 689 1020 IPR011009 -
Lja4g3004 1032 Coils Coil 1024 1032 - -
Lja4g3004 1032 ProSitePatterns Protein kinases ATP-binding region signature. 720 743 IPR017441 GO:0005524
Lja4g3004 1032 SUPERFAMILY L domain-like 41 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3004 Lja-Chr4 55729996 55733340 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3004 39 1023 Receptor kinase-like Gene Family AT3G47570 47.041 0.0 852
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Lja4g3004 Pkinase 3.3e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3004 - - gmx:100786600 1121.3