Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3003 ATGACCATCTTTTATGACTATTTTCACTCCAGTTTGTGGAGGCCGGCTGGTGTCCAACGGCGGACCGGTGACCGGCCACTCAGCAGTGCGGCCAATGTGGGTGGTGCTCCGCTCGCTTTCTCTTCCATTCCATTTTCACATAATTTCTTGTTCTATGTCTCTTCTTTTACTATCGTATCACTTCTCCATTATATATGCCACCACCTAAACTGGTTTCCACTCACATGCTCCCAACCTCACCACCCCATTTTCTTTTTCAGTGCAAGAATCACCCAATGGACAAATCTTCTAGTATGCGTACTACTATTTCTGAAGACAGAAGGAGGTTTTGTTCCACTCACTCGTCTTGATAAAGCTGTACCAAAAGGAGCTGTTTGTTTAGATGGAAGTCCCCCAGCATACCATTTTGATGAAGGGTCTGGAGAAGGAGCTAACAGCTGGCTTGTTCATCTTGAAGGAGGGGGATGGTGTAACAATGTCACCTCTTGCCTCTGGCGTAAGGACTCTCGTTTAGGCTCATCTGACCTAATGACCGAGCCACTTTACTTTGCTGGATTTTTAAGTGAGAAGCAAGAGTTCAATCCAGATTTCTACAATTGGAACAGAATCATGGTTAGGTACTGTGATGGGGCATCATTTACTGGTGATGTAGAGGAAGTTGATCCAACAACCAATTTGCACTTCAGAGGAGCAAGGATTTTCCTTGCTGTAATAGAAGATTTACTCTCAAAAGGAATGAATAATGCTGAAAATGCTATTCTCTCTGGATGTTCAGCAGGAGGATTGGCTACTATTTTACACTGTGATCACTTTAAATCACTTTTACCAGCAGGAACCAAAGTGAAATGTGTTCCAGATGCTGGTTATTTTATCAATGTAAAGGATATATCAGGATCACAATACATTGCAGAGTTCTACAATGAAGTTGTTGCAACACATGGCTCAGTAAAGAATTTGCCTTCATCCTGCATTTCAGAACGCGATCCAGGGCAGTGCTTTTTCCCACAATATGTGGCCCCAAATATCAATGCACCAAGCTTCTACGTAAATGCGGCCTATGACTCGTGGCAGATTAAGAACATCTTGGCACCGGGTGCTGCTGATCCCCAGGGCAGGTGGCAAAGCTGCAAGGTTAATATAAACAACTGCTCACCTGATCAGCTAACTACAATGCAAGGCTTCAGGTCGGCATTCATAAATGCATTGAGTGTGATAGGCAACTCTCCATCAAATGGAATGTTCATAGACTCTTGCTATGTTCACTGCCAAACAGAGGCACAGGAGACGTGGTTGACAAGTGATTCTCCACAGATTTCTAACACAACACTTGCCAAAGCAGTTGGAGACTGGTTTTATGAGCGAAGTACATTCCAAAAGATAGATTGCAGTTACCCTTGCAACCCTACCTGTCGTAACCGCAATTTGGCGTTCGTACATTCTAGGACAGAAGGAGGTATTGTTCCACTCATTCGTCTTGAGAAGGCGGTATCAAAAGGAGCTGTTTGTTTAGATGGCACTCCTCCAGCTTACCATTTTGATGAAGGGTCTGGAGAAGGAGTTAACAACTGGATTGTTTTCCTTGAAGGAGGAGGATGGTGTAATAATGTCACTGATTGCCTTTTGCGTAAGGACACTCGTCGAGGCTCATCTGACCAAATGACTGAGCCACGTTTCTTTAATGGATTTTTAAGTGAAAATCAAAAGTTTAATCCAGATTTCTACAATTGGAACAGAATCTTGGTTAGGTACTGTGATGGTGCATCTTTTACTGGGGATGTAGAAGAAGTTGATCCGGCGACAAATTTGCACTTCAGAGGAGCAAGGGTGTTTGTAGCTGTAATAGAAGAATTACTTGCAAAAGGAATGCAGAATGCTGAAAATGCTATTCTCTCTGGATGTTCAGCTGGAGGATTGGCTACTATATTACAATGTGATCACTTTAAATCACTTTTACCTGCAGAAGCTAAAGTGAAATGCGTTCCAGATGCTGGTTATTTTATCAATGTAAAGGATATATCAGGAACACAATACATTGAAGAGTACTACAATGAAGTTGTTGCAACACATGGCTCAGCAAAGAATTTGCCTCCATCCTGCACTTCAAGACGCAGTCCAGGGCTGTGCTTTTTCCCACAATATGTGGCCTCAGAAATCAGCACACCAATCTTCTATGTAAATGCAGCCTATGACACATGGCAGATTCATAATATCTTCGCCCGAGGTTCTGCGGATCCCCATGGCATTTGGCATAACTGCAAGCTTGATATAAACAACTGCTCACCTGATCAGCTAACTGCAATACAAGGCTTCAGAACAGAATTTATAAAGGCGTTGAGTGTGACAGAAAACTCCAGATCAGAAGGAATGTTCATAGACTCTTGCTATGTCCACTGCCAAACAGAAACACAGGAATCATGGTTGTCAAGTGATTCTCCACAGCTTGCTAACACAAAACTTGGCAAAGCAGTTGGGGACTGGTTTTATGAGCGAAGTCCTTTTCAAAAGATAGATTGCAGTTTCCCTTGCAACCCTACTTGTCGTAATCTTGCATTTGATCAACAAGTAATAAAACTCACTTTCAAATATGTTTAA 2592 0.4259 MTIFYDYFHSSLWRPAGVQRRTGDRPLSSAANVGGAPLAFSSIPFSHNFLFYVSSFTIVSLLHYICHHLNWFPLTCSQPHHPIFFFSARITQWTNLLVCVLLFLKTEGGFVPLTRLDKAVPKGAVCLDGSPPAYHFDEGSGEGANSWLVHLEGGGWCNNVTSCLWRKDSRLGSSDLMTEPLYFAGFLSEKQEFNPDFYNWNRIMVRYCDGASFTGDVEEVDPTTNLHFRGARIFLAVIEDLLSKGMNNAENAILSGCSAGGLATILHCDHFKSLLPAGTKVKCVPDAGYFINVKDISGSQYIAEFYNEVVATHGSVKNLPSSCISERDPGQCFFPQYVAPNINAPSFYVNAAYDSWQIKNILAPGAADPQGRWQSCKVNINNCSPDQLTTMQGFRSAFINALSVIGNSPSNGMFIDSCYVHCQTEAQETWLTSDSPQISNTTLAKAVGDWFYERSTFQKIDCSYPCNPTCRNRNLAFVHSRTEGGIVPLIRLEKAVSKGAVCLDGTPPAYHFDEGSGEGVNNWIVFLEGGGWCNNVTDCLLRKDTRRGSSDQMTEPRFFNGFLSENQKFNPDFYNWNRILVRYCDGASFTGDVEEVDPATNLHFRGARVFVAVIEELLAKGMQNAENAILSGCSAGGLATILQCDHFKSLLPAEAKVKCVPDAGYFINVKDISGTQYIEEYYNEVVATHGSAKNLPPSCTSRRSPGLCFFPQYVASEISTPIFYVNAAYDTWQIHNIFARGSADPHGIWHNCKLDINNCSPDQLTAIQGFRTEFIKALSVTENSRSEGMFIDSCYVHCQTETQESWLSSDSPQLANTKLGKAVGDWFYERSPFQKIDCSFPCNPTCRNLAFDQQVIKLTFKYV* 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3003 863 PANTHER PECTIN ACETYLESTERASE 87 473 - -
Lja4g3003 863 PANTHER NOTUM-RELATED 481 855 IPR004963 GO:0016787
Lja4g3003 863 PANTHER PECTIN ACETYLESTERASE 481 855 - -
Lja4g3003 863 Pfam Pectinacetylesterase 105 456 IPR004963 GO:0016787
Lja4g3003 863 Pfam Pectinacetylesterase 482 832 IPR004963 GO:0016787
Lja4g3003 863 PANTHER NOTUM-RELATED 87 473 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3003 Lja-Chr4 55692051 55729600 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3003 476 851 Carbohydrate Esterase AT4G19420 57.178 1.54e-172 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3003 K19882 - gmx:100776802 605.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3001 4 55249484 55253408 Lja4g3003 4 55692051 55729600 PCT