Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g3001 ATGTCCCACTTACACGTTAACATCACTCTTGGAAATAAGACAGTTAGATTAATGGAGTGTCCAAGAATGGGCCAATGGTTAAGCCTTCTATTATGTTTACTGCTATTACTAAAGGCAGAAGGAGTTGCTGTTCCAATCACTTTTGTTCAAAGTGCGGTCGCGAAAGGAGCTGTTTGTTTAGATGGGAGTCCACCAGCTTACCATTTTCATAAGGGATTTGGAGCAGGAATTAACAACTGGATTGTTCACTTTGAGGGAGGAGCATGGTGCAACAATGTCACTACTTGCCTAGCTCGTAGGGACACTCGTTTAGGTTCATCTAAGAAAATGTCGCAGACCCTTTCCTTTTCTGGGTTTTTCAGTAATGGGCAAAAGTTTAATCCAGATTTCTACAATTGGAACAGAATCAAGGTTAGGTATTGTGATGGGTCATCATTTACTGGTGATGTTGAAGCTGTTGATCCAAAAACCAATTTGCACTTCAGAGGAGGAAGGATTTTTGTTGCTGTCGTTGAGGATTTACTAGCAAATGGAATGAAAAATGCTCAAAATGCAATTCTCTCTGGATGTTCCGCTGGAGGATTGACCTCTATTTTACAGTGCGATCGCTTCAGATCTCTTATTCCTGCAGCAGCCAAAGTGAAATGCCTTTCAGATGCTGGTTATTTTATTAATCTAAAGGATGTGTCTGGAGCCGCACACATAGAACAGCTTTATAGTCAAGTTGTTGAAACCCATGGCTCTGCAAAGAATTTGCCTGCATCCTGCACCTCAAGACTCAGACCGGGGCTGTGCTTTTTTCCCCAAAATGTGGCAGGGCAAATCAAAACACCAATCTTCTTTGTCAATGCAGCGTATGACTCATATCAGGTTAAGAACATTTTGGCTCCAGGTGTTGCTGATCCCCATGGCACTTGGCGTGACTGCAAGCTTGATATAAAAAAGTGCTCTTCTAATCAATTAACTGTAATGCAAGGTTTCAGGACAGAATTCTTAAAGGCTATAAGTGTGGTTGAGAACTCTCCATCTAAAGGAATGTTCATAGACGGTTGCTATTCCCATTGCCAAACTGGAATGCAGGAGACATGGATGAGAAGTGACTCTCCAGTGCTGGCCAATACAACAATTGCAAAGGCAGTGGGAGATTGGTTTTATGAACGAAGGTCTTTCAGTCAGATAGATTGCTCTTACCCTTGCAACCCTACTTGTCACAACCGTGTTTTTGATGATAATTAA 1236 0.4191 MSHLHVNITLGNKTVRLMECPRMGQWLSLLLCLLLLLKAEGVAVPITFVQSAVAKGAVCLDGSPPAYHFHKGFGAGINNWIVHFEGGAWCNNVTTCLARRDTRLGSSKKMSQTLSFSGFFSNGQKFNPDFYNWNRIKVRYCDGSSFTGDVEAVDPKTNLHFRGGRIFVAVVEDLLANGMKNAQNAILSGCSAGGLTSILQCDRFRSLIPAAAKVKCLSDAGYFINLKDVSGAAHIEQLYSQVVETHGSAKNLPASCTSRLRPGLCFFPQNVAGQIKTPIFFVNAAYDSYQVKNILAPGVADPHGTWRDCKLDIKKCSSNQLTVMQGFRTEFLKAISVVENSPSKGMFIDGCYSHCQTGMQETWMRSDSPVLANTTIAKAVGDWFYERRSFSQIDCSYPCNPTCHNRVFDDN* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g3001 411 Pfam Pectinacetylesterase 38 388 IPR004963 GO:0016787
Lja4g3001 411 PANTHER PECTIN ACETYLESTERASE 21 409 - -
Lja4g3001 411 PANTHER NOTUM-RELATED 21 409 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g3001 Lja-Chr4 55249484 55253408 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g3001 22 408 Carbohydrate Esterase AT4G19420 58.531 0.0 538
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g3001 K19882 - gmx:100781246 683.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g3001 4 55249484 55253408 Lja4g3001 4 55249484 55253408 ECH
Lja4g3001 4 55249484 55253408 Lja4g3003 4 55692051 55729600 PCT
Lja4g3001 4 55249484 55253408 Lja4g3001 4 55249484 55253408 PCT