Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2995 ATGGCCGATGATAGTAGTGATCAGAGAAGTCTCTTCAGTGGCAAAACTGGTGTCTTACTAATTGCCATGGGTTTAGCTAGTTTTTTGGTCACAGTTTATCATCTCATATTCCTTTGCTGCCACCATGCCCGCCGTATAAGGCGTCTAGAACTAGCCGCCGCCGCCGCTGCCGCCACACTAACAGCGGACACTAGAGAGGGTAACACCCCGATTTCAGACCTGATTCCGGCTCACAAGTATGTGAGGAAGAATGGTGTGGTGGATGGTGATGAAGATGATGGAACTTGTGCTGTGTGCTTGGGAGACTTTGAAGAGGGTGAGGAGTTGAGGACATTGCCCTTGTGCATGCACTCTTTCCACGTACCATGCATTGATATGTGGCTCCATTCACATTCCACCTGTCCGGTTTGCCGGACCAATGCAACGCCATCGCCAGCAGTGGCCCACCAGCTGCCAGAGATTGCTCCAAGTGAGGTGAATACACATCAGAGCATAGATATGACACCCATAGCTCTTGCACAGATTGGATTTGGGCGATGA 540 0.5056 MADDSSDQRSLFSGKTGVLLIAMGLASFLVTVYHLIFLCCHHARRIRRLELAAAAAAATLTADTREGNTPISDLIPAHKYVRKNGVVDGDEDDGTCAVCLGDFEEGEELRTLPLCMHSFHVPCIDMWLHSHSTCPVCRTNATPSPAVAHQLPEIAPSEVNTHQSIDMTPIALAQIGFGR* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2995 179 Pfam Ring finger domain 95 138 IPR001841 -
Lja4g2995 179 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 8 173 IPR044675 -
Lja4g2995 179 SUPERFAMILY RING/U-box 91 144 - -
Lja4g2995 179 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 8 173 - -
Lja4g2995 179 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 145 IPR013083 -
Lja4g2995 179 ProSiteProfiles Zinc finger RING-type profile. 96 138 IPR001841 -
Lja4g2995 179 SMART ring_2 96 137 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2995 Lja-Chr4 54983273 54983812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2995 17 177 C3H Transcription Factor Family AT5G17600 32.759 2.80e-24 95.5