Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2991 ATGGAGTCGAGTGGGAACGAGCGCGTGAGGACGATACGGGAGGTGTGCGCGAATGGGAGCTCCATGGCGACAGCTGAAGTTGAAGCTAAACTCGATGAAGGGAACATTCAAGAAGCTGAATCAGCATTGCGAGATGGCTTGTCTCTCAATTTTGAGGAAGCAAGAGCTCTTCTCGGAAAATTAGAGTATCAGAGAGGTAATGTCGAAGGTGCTCTTCGTGTGTTTGATGGGATTGATCTTCAAGCAGCAATACAGCGACTGCAACCTTCCCTTTCTGAAAAGCCAACCATCAAGAGAGGTCCCACCCGTACTGAGTCACCTTCCTCGGTCTCACAGCATGGTGCTAGTTTGGTGCTTGAAGCCATCTACTTGAAAGCCAAGTCTCTACAGAAGCTTGGGAAGTTTACTGAAGCTGCTAACGAGTGCAAGCATGTTGTTGATGCTGTTGAGAAGATATTTTATCAGGGTATATCTGATACTCAAGTGGACAGTAAATTGCAGGAGATAGTCAGCCGTGCGGTAGAGCTCCTTCCCGAGCTTTGGAAACAGGCTGGTTGCCATCCTGAGGCAATTGCTGCTTACCGGCATGCCCTTCTTAGTCAATGGAACCTTGACAATGAATGTTTCGCGAGAATTCAGAAAGAATTTGCTGTATTTTTGCTGTACAGTGGGGTGGAGGCAAGTCCACCTAGTTTAGCAGTTCAGACTGACGGGTCTTACGTACCTAAAAATAACCTGGAAGAGGCAATGCTTCTTCTTATGATTCTCTTAAGAAAGTTTAGCCTAGGTAAGATAACTTGGGATCCTTCAATTATGGACCACCTAACATTTGCACTTTCAGTATGTGACCAAACTACTACATTAGCTAAGCAACTTGAAGAGTTGATGCCTGGTGTATATCACCGTATCGACCGTTGGAATTCTTTAGCTCTTTGTCATAGTGGAGCTGGACAAAACAAAAGTGCATTGGATTTGCTAAGGAAATCATTGCACAAGCATGAACGACCAGATGACCTGACATCGTTATTATCAGCTGCCAGGATTTGCAGTGAGGATCCCCATCTTGCTGCCGAGGGAGCAGGATATGCGCAGAGGGCAATCGATAATGCCGAAGGCTTAGATGAGCATTTGAAAGGTGTCACTCTTCGGATGCAGGGACTTTGCCTTGGCAAGCAAGCTAAGGTTGCTTCATCTGACTTTGAGAGGTCTATGCTTCAGTCAAAATCTCTGCAATCATTGGAGGATGCAGTTAGACTAGAGCCAAACAACTCTGATCTAATTTTTGAATTGGCTATTCAATATGCCGAGCACCGAAATCTGACTGCTGCTTTACGCTATGCCAAGCAGTACTTTGACAAAACTGGTGGCTCCAAGTTGGAGGGATGGAGATTACTTGCACTGGTTTTGTCTGCCCAAAAAAGATTTTTGGAGGCTGAAGTGGTGACTGATGCTGCTTTAGATGAGACTTCAAAATGGGAGCAAGGGCCACTGTTCAGGCTGAAAGCCAAGCTGAAGACCTCCCAGTTACGACCAATGGATGCTATTGATCTTTATCGTCACCTTCTTGCATTGGTCCAGGCCCAGAAGAAATCATTTGGGCATCTTAGACCTAGTTCACAGGTTGAGAATGATAAAATACATGAATTTGATGTATGGCATGGTCTGGCAAATTTATATGCAAGCCTTTCTCATTGGAAAGATGCTGAAATCTGTTTGCAAAAGGCCAGAGAGTTAAAGGAATACTCAGCAGAAACAGTACACACTGAAGGTGTTATGTTTGACAGTCGTGGACAACTTGAAGAAGCTCTTGTGGCTGCTGTTAATGCTGTCCTGCTTGAACCAAACTATGTTCCAAGCAAGATCTTGGTAGGATCTTTGATGCTGAAATTGGGTTCTAAAGCTCTGCCTGTTGCTAGAAGCTTGCTTTCTGATGCACTTAGAATAGAACCCACTAACCGCATGGCTTGGTATTATTTGGGGTTAACTCACAAGGCTGATGGCCGAGTGGGCGATGCTGCTGACTGCTTCCAGGCAGCTTACATGCTTGAAGAATCGGAGCCCATTGAAGATTTCATCTGCACGCATTGA 2088 0.4531 MESSGNERVRTIREVCANGSSMATAEVEAKLDEGNIQEAESALRDGLSLNFEEARALLGKLEYQRGNVEGALRVFDGIDLQAAIQRLQPSLSEKPTIKRGPTRTESPSSVSQHGASLVLEAIYLKAKSLQKLGKFTEAANECKHVVDAVEKIFYQGISDTQVDSKLQEIVSRAVELLPELWKQAGCHPEAIAAYRHALLSQWNLDNECFARIQKEFAVFLLYSGVEASPPSLAVQTDGSYVPKNNLEEAMLLLMILLRKFSLGKITWDPSIMDHLTFALSVCDQTTTLAKQLEELMPGVYHRIDRWNSLALCHSGAGQNKSALDLLRKSLHKHERPDDLTSLLSAARICSEDPHLAAEGAGYAQRAIDNAEGLDEHLKGVTLRMQGLCLGKQAKVASSDFERSMLQSKSLQSLEDAVRLEPNNSDLIFELAIQYAEHRNLTAALRYAKQYFDKTGGSKLEGWRLLALVLSAQKRFLEAEVVTDAALDETSKWEQGPLFRLKAKLKTSQLRPMDAIDLYRHLLALVQAQKKSFGHLRPSSQVENDKIHEFDVWHGLANLYASLSHWKDAEICLQKARELKEYSAETVHTEGVMFDSRGQLEEALVAAVNAVLLEPNYVPSKILVGSLMLKLGSKALPVARSLLSDALRIEPTNRMAWYYLGLTHKADGRVGDAADCFQAAYMLEESEPIEDFICTH* 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2991 695 MobiDBLite consensus disorder prediction 91 110 - -
Lja4g2991 695 SMART tpr_5 653 686 IPR019734 GO:0005515
Lja4g2991 695 SMART tpr_5 549 582 IPR019734 GO:0005515
Lja4g2991 695 SMART tpr_5 303 336 IPR019734 GO:0005515
Lja4g2991 695 SMART tpr_5 119 152 IPR019734 GO:0005515
Lja4g2991 695 SMART tpr_5 583 616 IPR019734 GO:0005515
Lja4g2991 695 SMART tpr_5 459 492 IPR019734 GO:0005515
Lja4g2991 695 SUPERFAMILY TPR-like 416 524 IPR011990 GO:0005515
Lja4g2991 695 SUPERFAMILY TPR-like 546 681 IPR011990 GO:0005515
Lja4g2991 695 Pfam Tetratricopeptide repeat 429 485 - -
Lja4g2991 695 PANTHER CALMODULIN-BINDING PROTEIN 1 692 - -
Lja4g2991 695 Gene3D Tetratricopeptide repeat domain 540 687 IPR011990 GO:0005515
Lja4g2991 695 Gene3D Tetratricopeptide repeat domain 20 202 IPR011990 GO:0005515
Lja4g2991 695 PANTHER PROTEIN NPG1 1 692 IPR043376 -
Lja4g2991 695 SUPERFAMILY TPR-like 54 452 IPR011990 GO:0005515
Lja4g2991 695 Gene3D Tetratricopeptide repeat domain 240 539 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2991 Lja-Chr4 54919984 54925343 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2991 12 691 Calmodulin-binding Proteins AT2G43040 70.760 0.0 965