Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2986 ATGGACACTGAAAATGGCCAGACTGCAGAAGCTCCTGCAAAGCCCCCCAAACACCCCTCAAGAGTCAAAACTCTTGAGCGCCTTAGCTTCTCCAAGCCCAAATCCCGAATCCTTGAATATAACTATTCACCTCGCAACAAAGTAGTAGCAGCATCTGAAGAAACTGACCTTCAACCTTCCCACAAGATCTCAATCCCTCCCGTGGATGATGACGATGACGACGATGATGGTGAGTGGGATGAAAAAGAAGAGCCGGAGGACGACGATGATGATGGTGAAGAGCAGTTTCCAAAGACACACCAAAAAAGGAAATTCAGGGTTAAGTGGAGACTTCTGGTGGAGTGGGTTTTGTTTCTGAACATATTGACATGCTTAGTGTGTTCTGTCACAATATTGTCCATAAAAAACATACACTTGTTCGGTTTGGAGATTTGGAAGTGGTGTTTGATGGCAATGGTTACTTTCAGTGGCCGTTTATTCTCAGGGTGGCTAGTCGGCCTCACCGTTTTCATCATCGAGCGAAACTTCATGCTAAGGGAGAAGGTCCTCTACTTCATCTACGGAATCAGAAGATCCATCAGGAACTGTTTATGGCTAGGACTCGTCTTGGTCTCTTACTGGAGCGTGGTGTTCGAAGATGTCCAGAAGAAAAACCACAAGTTCCTCAACAAGGTGTTTCAAGCACTGGTGGCGGTTTTAGTCGGCGCCACCATCTGGCTGGTGAAGATTGTGCTAGTGAAAATGCTAGCTGCTTCATTTCATGTGACAACTTACTTTGACAGAATGAAAGAGAGCGTTTTCCATCACTACATTCTCGACACTTTGTCAGGTCCACCTATGGAAGAAGCTGAGCAAATATTGCAGCAGCAGCACCACCACCTAGCGGGGTCAAAGTCGATGCCAGCGAGGTGGAAGATGAAGGATGCTAAGAACTATTATAACAAGTACTCTAAGAGGTTTGGGTCGAGGAAGATTGATATGGAGAAGCTGAGGGAGCTGAGCATGGAGAGCACAGCTTCTGCATGGAGTGTGAAGAGGCTTGTTCACTATGTAAGATCTTCTGGTTTGTCTACCATTTCAAGGACTGTGGATGATTTTGGTAGTGCTGAGTCTGAGATTAGCAGTGAGTGGGAAGCCAGGAATTGTGCTCAAAGGATTTTCAAGAACGTTGCCAAACCTGCTGCCAAGTACATAGAAGAAGAGGATCTAATGAGATTTTTGAAGAGGGTTGAGATACACACCATATTCCCACTCTTTGAAGGTGCTCTTGAAACTGGGAAAATCAGCAGATCTTCATTCAGAAATTGGGTGATTCGAGCTTATTATGAACGAAAAGCTCTTGCACAATCACTGAATGATACCAAAACAGCAGTGCAGCAGCTTCATAAACTAGCTAGCGCGGTTGTAAGTGTGATAATAATCATTGTGATCCTTCTACTGATGGGAATGGCTACCATGAAGATAATACTCTTCTGCATCACACAAACCGTTTTAATCGGGGTTGCCTTCCAAGGTACCTGCAAGACTGTTTTGGAGGCCATAATCTTTGTCTTTGTCATGCACCCTTTTGATATTGGAGACCGTTGCGTCATTGATGGTGTTCAGATGATTGTGGAAGAGATGAATATCTTGACAACAGTGTTTCTTCGATATGACAATGAGAAAATATACTACCCTAACGCAGTTTTGCTCACTAAGCCAATAAGCAATTTCTATAGGAGTCCAGAGATGTGCGACTCAATTGATTTCACTATTGATGTGTCAACTCCCATGGAAACAATCATTGCCGTCAAGAAATCAATACAAATGTACATCGAGAGCAAGCCAAAATATTGGAATCCTAAGCACAGTGTGCTAGCCAAACAAATAGACCATGTGGACAAGTTGAAGCTGTGTTTATGTGTGCAACACACCATCAACCATCAGAACTACGGCGAGCGAAGCGTTCGAATAACGGAGCTGGTCTTGGAATTGAAAAAGATATTTGAGATGCATGGTGTCAAGTACCATAATCTTCCTCAGGAGATCCACCTTACCAAGATGAACATGGAGCAGGGGAGAGTTCTATTTTAA 2073 0.439 MDTENGQTAEAPAKPPKHPSRVKTLERLSFSKPKSRILEYNYSPRNKVVAASEETDLQPSHKISIPPVDDDDDDDDGEWDEKEEPEDDDDDGEEQFPKTHQKRKFRVKWRLLVEWVLFLNILTCLVCSVTILSIKNIHLFGLEIWKWCLMAMVTFSGRLFSGWLVGLTVFIIERNFMLREKVLYFIYGIRRSIRNCLWLGLVLVSYWSVVFEDVQKKNHKFLNKVFQALVAVLVGATIWLVKIVLVKMLAASFHVTTYFDRMKESVFHHYILDTLSGPPMEEAEQILQQQHHHLAGSKSMPARWKMKDAKNYYNKYSKRFGSRKIDMEKLRELSMESTASAWSVKRLVHYVRSSGLSTISRTVDDFGSAESEISSEWEARNCAQRIFKNVAKPAAKYIEEEDLMRFLKRVEIHTIFPLFEGALETGKISRSSFRNWVIRAYYERKALAQSLNDTKTAVQQLHKLASAVVSVIIIIVILLLMGMATMKIILFCITQTVLIGVAFQGTCKTVLEAIIFVFVMHPFDIGDRCVIDGVQMIVEEMNILTTVFLRYDNEKIYYPNAVLLTKPISNFYRSPEMCDSIDFTIDVSTPMETIIAVKKSIQMYIESKPKYWNPKHSVLAKQIDHVDKLKLCLCVQHTINHQNYGERSVRITELVLELKKIFEMHGVKYHNLPQEIHLTKMNMEQGRVLF* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2986 690 MobiDBLite consensus disorder prediction 69 93 - -
Lja4g2986 690 MobiDBLite consensus disorder prediction 50 97 - -
Lja4g2986 690 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 5 689 IPR016688 -
Lja4g2986 690 Gene3D - 522 571 IPR023408 -
Lja4g2986 690 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 689 - -
Lja4g2986 690 Pfam Mechanosensitive ion channel 463 668 IPR006685 GO:0016020|GO:0055085
Lja4g2986 690 SUPERFAMILY Sm-like ribonucleoproteins 513 571 IPR010920 -
Lja4g2986 690 MobiDBLite consensus disorder prediction 1 29 - -
Lja4g2986 690 PIRSF Memb_At2g17000 9 689 IPR016688 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2986 Lja-Chr4 54781123 54789517 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2986 11 682 Mechanosensitive Ion Channel Family AT5G12080 42.939 0.0 560
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2986 K22048 - gmx:100813521 1076.23