Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2982 ATGTTTACATGCATAGCTTGTACGAAGCAAAGTGAAGATGAGGAAGGAGGACCCCGTGAGAGTGGCACGCCGAGTACAAAAGAAGCCGTCAAAAGCCTGACCACGCAGATAAAGGATATGGCACTGAAGTTCTCAGGTGCTTACAAGCAATGCAAACCCTGCACAGGGTCCAGTAGCAGCTACAAGAAAGGACACAGACCATATCCAGACTTTGATACCATCTCAGAAGGGGTTCCATACCCTTATATGGGAGGTGCAAGCTCAAGTTCAACCCCTGCATGGGACTTCACAACCTCTAACTACCCTGGTGGTAGACCTGACCCGAGATTTGCCGGTGACCGAACCCCTAGAGGGCGTGACTCAGCATCAGTCTGTGATGTTGTGTTAGAGAATGAGGAGGAGCCCAAGGAGTGGATGGCACAGGTAGAGCCAGGGGTTCACATCACCTTTACTTCTCTTCCTAATGGGGGCAATGATCTCAAGAGAATTCGATTCAGCCGAGAGATGTTCAATAAATGGCAAGCACAGAGATGGTGGGGTGAGAATTACGACAGAATCATGGAACTTTACAATGTCCAGAGATTTAACCGACAATCTCTCAACACTCCTCCAAGATCTGAAGATGAGCAAAGAGATTCTACTTACTCAAAATTGACATCTGCACAAGAAAGCCCCATGATCTCGCACAAAGATTGGACACCGAGGAGTCAATACAAACCGTCGGATTATGGTGGTGGTGGCCACCAGTTCCATGCTGGGCCGTCGATGGAACCATCAAGGCCAACCACCTCTTCAAGGGATGAGCCTTCTATCAGCAATGCCAGTGAAATGGAGTCAGAATGGGTGGAGCAAGATGAGCCTGGTGTTTACATCACAATCAGGCAGTTAGCTGATGGGACCAGGGAGCTAAGACGTGTCAGATTCAGCCGGGAAAGATTTGGGGAGGTTAATGCAAAAACTTGGTGGGAAGAGAACAGAGAGAGAATACAAGCTCAATATCTTTGA 1005 0.4836 MFTCIACTKQSEDEEGGPRESGTPSTKEAVKSLTTQIKDMALKFSGAYKQCKPCTGSSSSYKKGHRPYPDFDTISEGVPYPYMGGASSSSTPAWDFTTSNYPGGRPDPRFAGDRTPRGRDSASVCDVVLENEEEPKEWMAQVEPGVHITFTSLPNGGNDLKRIRFSREMFNKWQAQRWWGENYDRIMELYNVQRFNRQSLNTPPRSEDEQRDSTYSKLTSAQESPMISHKDWTPRSQYKPSDYGGGGHQFHAGPSMEPSRPTTSSRDEPSISNASEMESEWVEQDEPGVYITIRQLADGTRELRRVRFSRERFGEVNAKTWWEENRERIQAQYL* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2982 334 Pfam Transcription factor BRX N-terminal domain 21 54 IPR027988 -
Lja4g2982 334 MobiDBLite consensus disorder prediction 215 231 - -
Lja4g2982 334 ProSiteProfiles BRX domain profile. 279 334 IPR013591 -
Lja4g2982 334 MobiDBLite consensus disorder prediction 9 29 - -
Lja4g2982 334 Pfam Transcription factor regulating root and shoot growth via Pin3 136 190 IPR013591 -
Lja4g2982 334 Pfam Transcription factor regulating root and shoot growth via Pin3 278 333 IPR013591 -
Lja4g2982 334 MobiDBLite consensus disorder prediction 99 121 - -
Lja4g2982 334 PANTHER BREVIS RADIX-LIKE PROTEIN-RELATED 1 334 - -
Lja4g2982 334 MobiDBLite consensus disorder prediction 256 278 - -
Lja4g2982 334 ProSiteProfiles BRX domain profile. 136 191 IPR013591 -
Lja4g2982 334 MobiDBLite consensus disorder prediction 199 283 - -
Lja4g2982 334 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 334 IPR044532 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2982 Lja-Chr4 54700972 54706342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2982 1 334 Major Intrinsic Protein MIP AT1G31880 69.122 2.07e-166 466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2982 4 54700972 54706342 Lja4g2982 4 54700972 54706342 ECH