Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2980 ATGGTGAAAGCCGAAGAATCTCAACCTCATCATCATCATCACGTTCGCATCAAAATCAATTGCCCTACTCCTATTAACAAGAACAAGAAGAAGAAGAAGAATGTGCAGCAACCTTGTCACTACCTGTGTGGTTTCTGCAACAAAAGTTTCGCTTCTGTTTATGCTTTGAACGGACACACCAGAATGCACTCATCATCGCACTCCGACAACAACAACAACAACAACAACGTTGTCAAAACCTACGACGGCACAAACACATTCCCTTCCGACAAGTCTTTGTTTTCTCACACGACCGTGACGAGGGAAATTACGCCGTGTCGGAACATTTGGAGTGGCTGCCGCTTCAACATTGCGGCGGCGTACGGTGGTGATGACACGTTCTGCCATTCTTCTTCTGCGTCTGAACACTCTGATGATTACTTATCTGATGGCTCTGTTTTCCGATCATGGCCTCTGTCTTGCAAAAGAAGCCGCAAACCGAGATTGTCCCCTCGCCTCCGCCGCCGCCGTGGAAGTTCTTGTTCGGAAGTTGAAGTCGACCCTCTTATGCAAGAAGCTGCGTATACTCTCATGTTGTTGGCAAATGGGGTTCTTCATTCTTCAACACCAGGAGGAGGAGTGCTTTATAACTTAACACATTGGCCCCACAAGCTGGAGTGCTTTATAAAGAAAAGGTCCTTCGGCGTGAGTATCTACAAGGAGCCCGTCTTTTTGATATTAGCAAACAAGCAGAGTAGTGTGGTTTCAGGTCACTCTGTTGTATCAGCTTTTGCTTGGTTCATGAACTCAGGTGCTGCTGTCTTCGCATTTTGGCTGGAACTCAGAAGGATCTTTGTGGATGTTGATTGGATACAAAATGTGTGGCACTACAAGACTTTGCCACAGCACACCTTAAGGACAAGGCATGGTTTTGGTTCCAGAGGGTTCTGGCAGTGGCTAATCTGGTTTGTTATTCCGTCAATCTGTGAGTTCTTGGTACCAAGGTTCCTTCCAAGAGCTTTCAAGAGAGGTATCAGATTTATGCTAAGGAAGCCCCTCACCTATGGTGAAGCCAGATTAAGGGATTTGATTTGGCATTTAATATAG 1086 0.4604 MVKAEESQPHHHHHVRIKINCPTPINKNKKKKKNVQQPCHYLCGFCNKSFASVYALNGHTRMHSSSHSDNNNNNNNVVKTYDGTNTFPSDKSLFSHTTVTREITPCRNIWSGCRFNIAAAYGGDDTFCHSSSASEHSDDYLSDGSVFRSWPLSCKRSRKPRLSPRLRRRRGSSCSEVEVDPLMQEAAYTLMLLANGVLHSSTPGGGVLYNLTHWPHKLECFIKKRSFGVSIYKEPVFLILANKQSSVVSGHSVVSAFAWFMNSGAAVFAFWLELRRIFVDVDWIQNVWHYKTLPQHTLRTRHGFGSRGFWQWLIWFVIPSICEFLVPRFLPRAFKRGIRFMLRKPLTYGEARLRDLIWHLI* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2980 361 SUPERFAMILY beta-beta-alpha zinc fingers 40 65 IPR036236 -
Lja4g2980 361 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Lja4g2980 361 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
Lja4g2980 361 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2980 Lja-Chr4 54669032 54673326 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja4g2980 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2980 - - lja:Lj4g3v1062140.1 155.221