Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2975 ATGGCACGTAGGGTGAACATGATCTCGGAAATAAATGATAGTATATCAACTTTGAAGCTACAAGTCAGAGTAATGAGTCTTTGGGAAGTCATGAAGTTCGAAAATAATGCTGAAGTCCAATCTCTCGAGATGCTGCTCATTGATGAAGAGGGAGATAAAATTCAAGCAACTGCTAATGACTCACACATTAACAAGTATCGGTCAAGCATCATTGAAGGAAATTGTTACCTGATTGGAAACCTGACAGTTTCGAAGAACAATGGAAGATATAAGGTTACTAGACACAACTTCAGACTGTTTTTCCAGAATACCACAGCCATGAAGGAAGTCAACTCTGAAAAGATTCCCAAGAGTAAATTCGATTGGGCTTCATTCACCGATATTGGGAGTGGAGCCATTAATAGAGACTGGATTATAGACATCATTGCAAGAGTGGTGAATATTAACAATGATAAGTATGTTCATCGAAGTGGAAATCCAACAAGAAAGATAGAAGTTGAATTAGAAGATGAAAGAAAATCTAGAATGAATTGCACATTATGGGGGAGATATGCTGAAGATATATGTTCAGAGTTGGATAAAAGTGTAGATAATTGCTTGGTTATTGCATTACATCTCGCTATCATACGAGATGTGAAGGGGAACCTTGAGTTATCCAACTCCATGTACGGAACTAAGTTGTACATAAATCCTGATTGGGAGGAAGCGAAGGAGTTGAAAAATAGAACATATCCTGTAGATGGGGCTCTATCTCTTAAATCCACACAACTTTCTGCAAGCTCTAAACAAACACCTGAAGAAGATTGGTTGAGCCTAACTAATAGAAAGACCATTGCAGATCTTAAAACAACAAGAGAGGTTGGAACTTGGAATGTTCTAGGAACAGTTCATAAACTGGTGACAAATTATGGCTGGTCATATTCAGGGTGCTCTAAATGCACCAAGAAAATTGACTATGAGAATAATATTGCCAAGTGTAAAAACTGCAAAGGAACTGTTTTTGCCGTTCCAAGGTATCGTGTCCAAGTTGATGTGCGAGATGATACCGATAGTGCTGAATTTGTGATATGGGACCGAGAAGCTTCTTTGTGGATCAAAAAGTCAGCTGCAATTGTTCAAAAGGAAGCAGATGAGGCTGATGAGTTGCCGGGTATGCCTCCTGTTGCATTGGATATTTTTGTTGGGAAAACTTTCATATTCAAGATAAAAACTGATGATAGTAAGAATGGAAAATATGCGAAGAGTTATTCTGTGTACACAGTGACTGATGCTCCTGATATGATCAAACTTTTTACCTCAAATGATGACACAGTACAGTGTCTTTCAAGGGCCCTCAGAAATGAAAACCCAAAGTTGCTGATGGTAGCATCTGCAGTATTTCTTCCAGTTAATCCATTCATGGTTTCAGCTATTCACACTAGGATGTTGGAGCGTACTGATTTAGTCATATAA 1452 0.3836 MARRVNMISEINDSISTLKLQVRVMSLWEVMKFENNAEVQSLEMLLIDEEGDKIQATANDSHINKYRSSIIEGNCYLIGNLTVSKNNGRYKVTRHNFRLFFQNTTAMKEVNSEKIPKSKFDWASFTDIGSGAINRDWIIDIIARVVNINNDKYVHRSGNPTRKIEVELEDERKSRMNCTLWGRYAEDICSELDKSVDNCLVIALHLAIIRDVKGNLELSNSMYGTKLYINPDWEEAKELKNRTYPVDGALSLKSTQLSASSKQTPEEDWLSLTNRKTIADLKTTREVGTWNVLGTVHKLVTNYGWSYSGCSKCTKKIDYENNIAKCKNCKGTVFAVPRYRVQVDVRDDTDSAEFVIWDREASLWIKKSAAIVQKEADEADELPGMPPVALDIFVGKTFIFKIKTDDSKNGKYAKSYSVYTVTDAPDMIKLFTSNDDTVQCLSRALRNENPKLLMVASAVFLPVNPFMVSAIHTRMLERTDLVI* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2975 483 CDD RPA1_DBD_A_like 19 105 - -
Lja4g2975 483 Gene3D - 113 245 IPR012340 -
Lja4g2975 483 CDD RPA1_DBD_B_like 140 244 - -
Lja4g2975 483 Pfam Replication factor-A C terminal domain 292 421 IPR013955 -
Lja4g2975 483 Gene3D - 5 112 IPR012340 -
Lja4g2975 483 SUPERFAMILY Nucleic acid-binding proteins 120 243 IPR012340 -
Lja4g2975 483 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-LIKE 7 413 - -
Lja4g2975 483 SUPERFAMILY Nucleic acid-binding proteins 273 423 IPR012340 -
Lja4g2975 483 Pfam Domain of unknown function DUF223 43 129 IPR003871 -
Lja4g2975 483 PANTHER REPLICATION FACTOR A 1, RFA1 7 413 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lja4g2975 483 CDD RPA1_DBD_C 278 423 IPR013955 -
Lja4g2975 483 Gene3D - 258 431 IPR012340 -
Lja4g2975 483 SUPERFAMILY Nucleic acid-binding proteins 8 110 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2975 Lja-Chr4 54579848 54584693 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2975 20 350 Core DNA Replication Machinery Family AT4G19130 23.513 1.09e-17 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2975 - - vun:114187234 219.164