Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2965 ATGGAACCTGGTCGCTATGCTCTGCATCAAGGATGGGATAATAACAGCGCTCTTGAGGGTTATGGTGCGGTCCATGAGCCAAATTTTCGGGTTGGTGATTCTTATGATGAAAGACGATTTATAGATGAAAGATATCAAAGAGATGCTATATATCAGAGAAATACTTTCCCCCGTGATGGTTTGGACAGAGAGGCCTATCTGCCACCAGGACCTGCTGTTGGCCACTGGAGTCAATCCAAACGGAGAGGTTATGACGAAGATTATCCACTTGAAAGGCAATCTAGACGACTTCAGAGGCCTTATCATGAATCTTATAATCAGATCGACAGGGATCGTGAAATCGGCATGTACCAAGAATATGATAAATTTCAGGATGACTATACCAGCATTGAAAATTATGCTGATCGAGGATATGATAAACCTGCCAGGTTTGCAGGAGATGACCGTGATGATTATGCATATGATGATTATGGCTACAAGTCGCGTGTTTCTCACCACCGCAGGGAGGATAGCCATGAGAGGGATTATGATCATGGTCGGCATAGTTATGATTCTGATTATGATAGAGGCAATAGAAGAGATAGTAATTGGAGGCAACGTGAATCACGAGAACGAGATACGAAAGGCCTTAGTCGGGAAAGAGATCTGAGTCCACATAGGAAACATGAGCGTTCCCATTCCCATTCCCGGTCTCGTTCCCGTTCTCGATCACGGCGTTCCCGTTCTCGATCACATTCCCATTCCCATTCCCGTTCTCGTTCCCAATCTCGTGGATATGATGATCATCCAAGATCTAGGTCCCCTAGAGGTCGAAGTCATAGTCGTAGTTATCGGGAAGACAGCTATGTTGACAGTCAATATGATAGAAGTGAAAGACGTAGGGATCGTGAGGATAAACGTCAGCGTGAGCATTATTCTGTGGCCCCATCTGCAACTGTTGTTGTGAAAGGTCTTTCACAGAAGACAACTGAAGAAGATTTATACCAAATCCTTGCGGAATGGGGACCCCTTCGTCATGTTCGTGTTATAAAGGAGAGAAATTCTGGCCTCTCTCGTGGATTTGCATTTATTGATTTTCCTTCTGTGGGAGCTGCACAAGGTATGATGGACAAACTAGGAGATGAAGGTCTTGTCGTGGATGGAAGAAAGCTTTTCTTTGAATATAGTAGTAAGCCAACTGGAGGTGCAGGTCCAGATGGAGCTATGAAACCTGGTCATAGTCATAAGAGCATTACAGTACCATCTGATTGGATGTGCACTATATGTAGCTACATCAATTTTGCACGCCGGACTTCCTGTTATCAGTGTAATGAGCCACGGACAGATGATGCTCCTGCAGCAGATATTTCATCATCTAATTCGGCAGCCTTGGGAAAGAAAGGCTTGGAGGCAGGTCCAACCCATGTTTTGGTTGTCCGTGGATTGGATGAAAATGCTGATGAGGAAATGCTCCGCTATGAGTTTTCCAAACATTCTCCAATCAAGGATCTACGTCTTGTGAGAGACAAGTTTACTCATGTCTCAAGGGGTTTTGCTTTTGTACACTTTTACTCGGTGGAGGATGCTACAAAAGCTCTTGAGGCAACAAATGGAACAACTCTTGAGAAGAATGGGCAGATTCTAAGAGTAGCATATGCAAAAAGTATACTCGGACCTGGATCAGGAGCATCAGGAACTTCCCAATCAAGCAGTCTTGCAGCTGCTGCTATTGAGGCTGCAACATTTGCCCAACAGTATGATTCTGTGGGATGGGCTCCAAAAGAATACAATGCAGATGACAAACAATGTACTGCTCCAGCGCAAACTGGCACTGAAGTTGGTGCTCCACAATCTGGCTTTGTGTGGGATGAAGCATCGGGATATTACTATGATGCTGCTTCTGGTTTTTATTATGATGGGAATACTGGTCTTTACTATGATGGTAATAATGGGATATGGTATTCATATGATCACCAGACTCAGCAGTACATCCCTTGCACTGATCAAAATCAGAATAAAACAGCTAATAGTGAGTCCGAACCTTCTAAGGCATCAGATGGCCCCAGCAGTAAAAAGGTGGTGATTTCTGCACCAGCTACAACTGTTACATCAATTGAGAAGCCAGCTTCGTTGGCAGATGCTGTCCAGGCTGCTGCAACTGCTGCTTTAGCTGCAGAGAAGAAAGAGAAAGAAAAATTGAAGGAGATAAAACTGGCCTCAAAAACCAGTATTCTGGCAAATAAGAAGAAAATGAACAATGTATTGACGATGTGGAAGCAGAGGAGCCATGAAGGGCAGGCTACTCGTGTTGCTCTGGATGACAATCAGTCATCTATTTCAGCTGATGATAGGTCATATTCTTCTGGACATTCTGCCAAGAATAAGTCAAAAAATGAGACTACAGTAAGGGAAAGTACTGCATCTAACCTGGGAGTTCACACAACTCGTGCCCAGATTGCTGCTACTGATTCTCAGGCACAGCCACGGCCTGTCAGTAATAGCCTTGGGGGGACTCTGATGGGGGTTATAAGAGGCTCAGGAAGAGGGGCTGTCAAATCAGATGCTTCTTATTCTGGTTCTACAACTGCTGCACCGTCTATGGCAAGTTCATCTTCAGCCAATATTGATGGACAGTCAACTCCCACTCCCTATAGAACAGATGTCTCTGCCCTGGGTTCATACACACCATCTGTGACTGCTGGAAGTGGACGGAGAAGGTTTTCAGAAATGCCTCATTCTGCTTCAACTCAGAAGGAACTACCTCAAACTACCTACAGGGACCGTGCAGCTGAGAGGAGAAGTTTGTATGGCTCATCATCGTCAATTGGAAATGATTTGGAAGACCTTGATATTGGGGATTCAAATCGAGATTTCACGTCAAGGAAGGGTGATCCAATGCCATTCCCTCCTGGGGTTGGTGGAGGGCGCACAGTTGGAGATGTCAACCTTGATACTTTTGAAGTGATTGCGGCAGACAAGGCAATTGATGAAAACAATGTTGGTAATCGGATGCTTCGCAACATGGGATGGCAGGAAGGCTTGGGATTAGGAAAGGATGGGAGTGGAATGATAGAGCCTGTCCAGACACAAGCCATGGAAAATAGAGCAGGACTTGGGAGTCAGCAGAAGAAGCTTGACCCTAGCCTCGAGGTGCAAGCAGGGGACAGTTACAAGATGCTTATTCATAAAAAAGCAGTTGCGAGGTTTCGGGAAATGTCGTAG 3201 0.4514 MEPGRYALHQGWDNNSALEGYGAVHEPNFRVGDSYDERRFIDERYQRDAIYQRNTFPRDGLDREAYLPPGPAVGHWSQSKRRGYDEDYPLERQSRRLQRPYHESYNQIDRDREIGMYQEYDKFQDDYTSIENYADRGYDKPARFAGDDRDDYAYDDYGYKSRVSHHRREDSHERDYDHGRHSYDSDYDRGNRRDSNWRQRESRERDTKGLSRERDLSPHRKHERSHSHSRSRSRSRSRRSRSRSHSHSHSRSRSQSRGYDDHPRSRSPRGRSHSRSYREDSYVDSQYDRSERRRDREDKRQREHYSVAPSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGLSRGFAFIDFPSVGAAQGMMDKLGDEGLVVDGRKLFFEYSSKPTGGAGPDGAMKPGHSHKSITVPSDWMCTICSYINFARRTSCYQCNEPRTDDAPAADISSSNSAALGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHSPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGTTLEKNGQILRVAYAKSILGPGSGASGTSQSSSLAAAAIEAATFAQQYDSVGWAPKEYNADDKQCTAPAQTGTEVGAPQSGFVWDEASGYYYDAASGFYYDGNTGLYYDGNNGIWYSYDHQTQQYIPCTDQNQNKTANSESEPSKASDGPSSKKVVISAPATTVTSIEKPASLADAVQAAATAALAAEKKEKEKLKEIKLASKTSILANKKKMNNVLTMWKQRSHEGQATRVALDDNQSSISADDRSYSSGHSAKNKSKNETTVRESTASNLGVHTTRAQIAATDSQAQPRPVSNSLGGTLMGVIRGSGRGAVKSDASYSGSTTAAPSMASSSSANIDGQSTPTPYRTDVSALGSYTPSVTAGSGRRRFSEMPHSASTQKELPQTTYRDRAAERRSLYGSSSSIGNDLEDLDIGDSNRDFTSRKGDPMPFPPGVGGGRTVGDVNLDTFEVIAADKAIDENNVGNRMLRNMGWQEGLGLGKDGSGMIEPVQTQAMENRAGLGSQQKKLDPSLEVQAGDSYKMLIHKKAVARFREMS* 1067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2965 1066 MobiDBLite consensus disorder prediction 846 895 - -
Lja4g2965 1066 ProSiteProfiles G-patch domain profile. 990 1036 IPR000467 GO:0003676
Lja4g2965 1066 PANTHER FI21118P1 217 1065 - -
Lja4g2965 1066 PANTHER FI21118P1 38 209 - -
Lja4g2965 1066 SUPERFAMILY RNA-binding domain, RBD 229 389 IPR035979 GO:0003676
Lja4g2965 1066 MobiDBLite consensus disorder prediction 162 305 - -
Lja4g2965 1066 Gene3D - 290 399 IPR012677 -
Lja4g2965 1066 SUPERFAMILY Ran binding protein zinc finger-like 409 443 IPR036443 -
Lja4g2965 1066 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 470 536 IPR000504 GO:0003723
Lja4g2965 1066 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 372 IPR000504 GO:0003723
Lja4g2965 1066 MobiDBLite consensus disorder prediction 223 252 - -
Lja4g2965 1066 MobiDBLite consensus disorder prediction 253 305 - -
Lja4g2965 1066 CDD RRM1_RRM2_RBM5_like 309 389 - -
Lja4g2965 1066 MobiDBLite consensus disorder prediction 61 84 - -
Lja4g2965 1066 Pfam OCRE domain 610 658 IPR041591 -
Lja4g2965 1066 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 468 548 IPR000504 GO:0003723
Lja4g2965 1066 SMART G-patch_5 988 1034 IPR000467 GO:0003676
Lja4g2965 1066 MobiDBLite consensus disorder prediction 902 916 - -
Lja4g2965 1066 MobiDBLite consensus disorder prediction 757 827 - -
Lja4g2965 1066 SMART rrm1_1 312 387 IPR000504 GO:0003723
Lja4g2965 1066 SMART rrm1_1 469 544 IPR000504 GO:0003723
Lja4g2965 1066 SMART zf_4 415 439 IPR001876 -
Lja4g2965 1066 CDD OCRE_SUA_like 607 659 IPR035623 -
Lja4g2965 1066 Pfam G-patch domain 991 1032 IPR000467 GO:0003676
Lja4g2965 1066 MobiDBLite consensus disorder prediction 662 685 - -
Lja4g2965 1066 SUPERFAMILY RNA-binding domain, RBD 466 553 IPR035979 GO:0003676
Lja4g2965 1066 Gene3D - 439 549 IPR012677 -
Lja4g2965 1066 MobiDBLite consensus disorder prediction 662 679 - -
Lja4g2965 1066 Gene3D - 409 438 - -
Lja4g2965 1066 ProSitePatterns Zinc finger RanBP2-type signature. 417 436 IPR001876 -
Lja4g2965 1066 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 391 IPR000504 GO:0003723
Lja4g2965 1066 MobiDBLite consensus disorder prediction 757 967 - -
Lja4g2965 1066 MobiDBLite consensus disorder prediction 162 222 - -
Lja4g2965 1066 CDD RRM1_RRM2_RBM5_like 466 546 - -
Lja4g2965 1066 ProSiteProfiles Zinc finger RanBP2 type profile. 413 442 IPR001876 -
Lja4g2965 1066 PANTHER RNA-BINDING PROTEIN 217 1065 - -
Lja4g2965 1066 PANTHER RNA-BINDING PROTEIN 38 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2965 Lja-Chr4 54291734 54300271 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2965 310 532 Eukaryotic Initiation Factors Gene Family AT2G36660 25.498 1.48e-09 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2965 K13094 - gmx:100777686 1719.13