Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2963 ATGACAATAATCCGTGTGTTGCTCTTTCTGGGACTTTTGGGGGCTCAAATTCATGGCATATCCTCATTTACTGATCCTCAAGATGTTGTTGCACTTAGATCTTTAAAAGATATATGGCAAAATACACCACCTAGTTGGGACAAATCAGCTGACCCTTGTGGAGAACGCTGGGAAGGAGTGACCTGCAACAAATCCAGGGTTACTTCATTGGGACTCTCAACCATGGGCCTGAAGGGTAAATTGAGTGGAGATATTGCCGGACTCACTGAATTGAGATCCTTGGACTTATCATTTAATAAGGATTTGATGGGGCCTCTCTCTCAAGAATTAGGAGAGCTGAGCAAGCTAAATATATTGATTTTGGCTGGTTGCAGCTTCAGTGGCAGTATTCCAGATGCATTGGGGAAACTTTCAGAGCTATCTTTCCTGGCTTTAAATTCAAACAACTTCACTGGAAAAATACCTCCTTCATTGGGTAATCTCTCCAAACTCTATTGGCTGGACTTGGCTGACAATCAGCTCACAGGGTCTCTACCAGTTTCAACCTCCACCACCCCTGGATTAGACCTGCTTTTAAAGGCTAAGCACTTCCATTTCAATAAGAACCAGCTTTCAGGTACCATTCCCCCCAAACTTTTCAGCTCAGAGATGGTACTCATACACATATTATTTGATGGAAACAATTTACAAGGGAGCATACCTTCGACAATAGGACTAGTTCAGACAGTTGAGGTCCTCCGGCTTGATAGAAATTTCATGACTGGAGAGGTCCCTTCAAATCTCAATAACCTTACAAACATCAATGAACTGAATTTAGCACACAATAAATTGACAGGTCCGTTGCCAGACTTAACTACAATGGATACACTCAACTATGTGGATCTTAGTAACAACTCTTTTGATCCATCTGAAGCTCCAATTTGGCTCTCAACTCTACCATCACTCACCACGCTTATTATGGAGTTTGGATCTCTTCAAGGTCCTCTTCCCACGAAACTCTTCAGCCTTCCTCAGATACAACAAGTGAAACTGCGAAACAATGCATTGAACAACACATTGGACATGGGTGACAGCATTTGTCCTCAGTTGCAGCTTGTAGATTTGCAGGCTAACCAGATTTCCTCAGTAACACTAAGTTCACAATACAAAAACACATTAATTCTCATAGGAAATCCAGTTTGCACTAGTGCTATTTCACACACAAATTACTGCCAACTTCAGCAACAGCGTAAACAACCGTATTCGACCAGCTTGGCTAATTGTGGAGGCAAATCTTGTCCTCCTGATCAGAAGATCTGCCCACAAAGTTGTGAATGTTCATATCCATATCAAGGAACGTTCTACTTTAGAGGACCCTTGTTCAGAGAATTGTCTAATGTAAGCACTTTCCATTCACTGGAAATGAGCCTTTGGGTAAAATTGGGTTTGACTCCTGGCTCAGTTTCTTTGCAAAATCCCTTCTTCAATAGTGATGATTATCTTCAAGTGCAACTAGCACTCTTTCCACCAGAAGGACTATATTTTAATAGGTCAGAAGTTCAAAGAATTGGGTTTTCATTTAGTAACCAAACTTACAAGCCTCCACATGAGTTTGGACCCTATTACTTCATTGCGTTTCCTTATGCTTTCTCAGACTCCAACAAAGGATCTTCTCTTAGAAAAGGTGTTGTTATTGGGATTGCAATTGGCTGCACAGTTCTGATGCTGAGCCTCATAGGACTAGGAGTATACGCGATTCTGCAAAAGAAACGCGCAGAGAAAGCAATTGGATTAAGTAGACCATTTGCATCATGGGCACCAAGTGGCCAAGATAGTGGAGGTGCACCACAATTAAAGGGAGCAAGATGGTTCTCTTATGACGAACTCAAAAAGTGCACCAATAATTTCTCGCAAAGTAGTGAGATAGGCTCTGGTGGCTATGGCAAGGTGTACAAAGGAGTTTTCCCTGATGGAAAAATGGTTGCAATCAAACGAGCTCAACAAGGATCGACGCAAGGAGGCCTAGAGTTCAAGAATGAAATCGAGTTGCTCTCAAGAGTTCACCACAAGAATCTTGTTGGCCTTGTGGGATTCTGCTTTGAGCAAGGAGAACAAATGTTGGTTTATGAATTTATGCCCAATGGAACACTTAGGGAGAGTTTATCAGGAAAATCTGGCATTCATCTTGACTGGAAGAGGAGACTCCGCATTGCTCTTGGTTCGGCCAGAGGACTTGCATATTTGCATGAGCTTGCCAACCCTCCCATAATCCACAGAGATGTGAAGTCATCTAATATCTTGCTGGATGAAAGTTTAACAGCAAAGGTTGCAGATTTTGGCTTGTCAAAGCTAGCAGCTGACAGTGAGAAAGGCCACGTTTCAACTCAGGTTAAAGGGACACTGGGTTATCTGGATCCTGAATATTACATGACCCAACAACTAACTGACAAGAGTGATGTGTACAGTTTCGGGGTAGTTATGCTTGAATTGATAACATCCAGACAACCTATTGAGAAGGGTAAGTACATTGTCCGCGAGGTGCGAACCTTGATGAACAAGAAAGATGAAGAGCATTATGGTTTGAGGGAACTCATGGATCCAGTGGTGAGAAACACACCAAACCTCATAGGGTTTGGGAGGTTCTTAGAGTTGGCAATGCAATGTGTTGAGGATTCAGCTTCAGACCGTCCAACAATGAGTGAAGTTGTGAAAGCATTTGAGACCATGTTACAGAATGATGGGGTGAATACAAATTCTACTTCTGCGTCCTCATCTGCCACTGATTTTGGAGTTACTAAGGGTGCTATGAAACATCCTTACATTGATGCTACCAGGGACAATGTTAATGATAGTAATAATGCCTTTGATTATAGTGGGGGATACACACCTTCAACAAAAGTAGAACCCAAATAA 2892 0.4219 MTIIRVLLFLGLLGAQIHGISSFTDPQDVVALRSLKDIWQNTPPSWDKSADPCGERWEGVTCNKSRVTSLGLSTMGLKGKLSGDIAGLTELRSLDLSFNKDLMGPLSQELGELSKLNILILAGCSFSGSIPDALGKLSELSFLALNSNNFTGKIPPSLGNLSKLYWLDLADNQLTGSLPVSTSTTPGLDLLLKAKHFHFNKNQLSGTIPPKLFSSEMVLIHILFDGNNLQGSIPSTIGLVQTVEVLRLDRNFMTGEVPSNLNNLTNINELNLAHNKLTGPLPDLTTMDTLNYVDLSNNSFDPSEAPIWLSTLPSLTTLIMEFGSLQGPLPTKLFSLPQIQQVKLRNNALNNTLDMGDSICPQLQLVDLQANQISSVTLSSQYKNTLILIGNPVCTSAISHTNYCQLQQQRKQPYSTSLANCGGKSCPPDQKICPQSCECSYPYQGTFYFRGPLFRELSNVSTFHSLEMSLWVKLGLTPGSVSLQNPFFNSDDYLQVQLALFPPEGLYFNRSEVQRIGFSFSNQTYKPPHEFGPYYFIAFPYAFSDSNKGSSLRKGVVIGIAIGCTVLMLSLIGLGVYAILQKKRAEKAIGLSRPFASWAPSGQDSGGAPQLKGARWFSYDELKKCTNNFSQSSEIGSGGYGKVYKGVFPDGKMVAIKRAQQGSTQGGLEFKNEIELLSRVHHKNLVGLVGFCFEQGEQMLVYEFMPNGTLRESLSGKSGIHLDWKRRLRIALGSARGLAYLHELANPPIIHRDVKSSNILLDESLTAKVADFGLSKLAADSEKGHVSTQVKGTLGYLDPEYYMTQQLTDKSDVYSFGVVMLELITSRQPIEKGKYIVREVRTLMNKKDEEHYGLRELMDPVVRNTPNLIGFGRFLELAMQCVEDSASDRPTMSEVVKAFETMLQNDGVNTNSTSASSSATDFGVTKGAMKHPYIDATRDNVNDSNNAFDYSGGYTPSTKVEPK* 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2963 963 SUPERFAMILY Protein kinase-like (PK-like) 614 911 IPR011009 -
Lja4g2963 963 Gene3D Transferase(Phosphotransferase) domain 1 705 923 - -
Lja4g2963 963 Gene3D Ribonuclease Inhibitor 185 284 IPR032675 -
Lja4g2963 963 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 935 - -
Lja4g2963 963 CDD STKc_IRAK 635 900 - -
Lja4g2963 963 ProSitePatterns Protein kinases ATP-binding region signature. 635 657 IPR017441 GO:0005524
Lja4g2963 963 SUPERFAMILY L domain-like 43 405 - -
Lja4g2963 963 Gene3D Phosphorylase Kinase; domain 1 603 704 - -
Lja4g2963 963 ProSiteProfiles Protein kinase domain profile. 629 903 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2963 963 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Lja4g2963 963 Gene3D Ribonuclease Inhibitor 27 184 IPR032675 -
Lja4g2963 963 Gene3D Ribonuclease Inhibitor 285 435 IPR032675 -
Lja4g2963 963 Pfam Protein tyrosine and serine/threonine kinase 632 898 IPR001245 GO:0004672|GO:0006468
Lja4g2963 963 SMART serkin_6 629 903 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2963 963 ProSitePatterns Serine/Threonine protein kinases active-site signature. 749 761 IPR008271 GO:0004672|GO:0006468
Lja4g2963 963 PANTHER LRR RECEPTOR-LIKE KINASE 1 935 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2963 Lja-Chr4 54106664 54113747 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2963 20 963 Receptor kinase-like Gene Family AT1G79620 71.692 0.0 1429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Lja4g2963 PK_Tyr_Ser-Thr 1.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2963 - - gmx:100792249 1687.55