Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2959 ATGGCGATGCTATTGAGAAAACTCTTCGATTCAGCCTCGTTGAAGCAGCGAACCACCTCCACCTCCCACCGCCACGCGCCGTCGCCGCTCGGTCTATTCGACGCGCTCCCTCACGACATACTGGTACAAATCCTGCGACTCTTGGCCCCCAACGACGCCGCCAAGCTCAGCCTCGCTTCCAAGGCGTGGCGCTCCGTCGTCGTCTCCGATCAAGCCCTCTGGGCCCGCTTCCTTCAGACCCACCAACATCAACCCTTCGACTCCATCGTGTTTGCAGAGACCATTCTGGCTTCTGGTTACCCCCTTCCGAGCTTGGTTAATCAAGTGCCGCCACTCGAGCGGGTGTTTTCACAACGCGCGCAGTTTCCTGGTGTTGTTATCATCGATGGTGGTTCTGGCTATTGCAAATTTGGTTGGAGCAAAGATGCGAGACCATCAGGACGAGCTGCAACCTTTTTGGAGTTTGGTAATGTGGAAATGCCTTTATACTCCAGACTTCGGCATTTTTTTGCAACTATTTATAGCAGGATGGAGGTGAAACCAAGTTCCCAGCCAGTTGTTGTTTCTCTACCAATATGCCACTATGATGATACCGCGTCTGCCAAAGCATCACGACAGCAGCTTAAAGAAGCAATCTATTCTGCCCTGTTTGACATGAATGTTCCTGCTGTTTGTGCTCTCAACCAAGCGACATTAGCTCTGTATGCTGCAAACCAAACATCTGGAATAGCTGTTAATATAGGTTTTCAAGTCACATCAGTAGTTCCAATTTTAAATGGTATGGTGAGGCGAGAGGTGGGTGTGGAGGTTGTGGGCTTGGGAGCACTAAACCTTACAGGATATCTTAGAGAGAAAATGCAACAAAGCAACATGCATTTTGAATCTTTGTACACTGTTCGCTTGCTGAAAGAGAAGCTCTGCTATGTTTCTTTGGACTATGAAGCTGAGCTATTGAAAGATACACAAGCATCATTTGAAGGTGTAGAAGGGTTGTTTACGCTCTCAAAAGAGCGGTTTCAAACAGCAGAGATCTTATTCCAGCCACGTCTTGCTGGGTTGCGAGGAATGAGTTTGCACCAGGCTATAGCTCTCTGCATGGACCATTGCTATTCTGCAGAATTAGCAGGCAACAATGATTGGTTTAAGACCATAGTCTTATCGGGAGGGACTGCATGTTTACCAGGCTTAGCAGAACGGCTAGAGAAGGAACTTCATTCGTTCCTTTCTCCACATATGTCCAACGGGATCAGAGTAATACCTCCTCCATATGGTGCAGATACAGCATGGTTTGGTGCAAAGATTATTGGCAGCTTGAGCACTTTTCCGGGGCCCTGGTGTACCACAAAGAAGCAGTTTCGTCGGAAGTCTAAAATCAACCGAGTATGGTGA 1389 0.4824 MAMLLRKLFDSASLKQRTTSTSHRHAPSPLGLFDALPHDILVQILRLLAPNDAAKLSLASKAWRSVVVSDQALWARFLQTHQHQPFDSIVFAETILASGYPLPSLVNQVPPLERVFSQRAQFPGVVIIDGGSGYCKFGWSKDARPSGRAATFLEFGNVEMPLYSRLRHFFATIYSRMEVKPSSQPVVVSLPICHYDDTASAKASRQQLKEAIYSALFDMNVPAVCALNQATLALYAANQTSGIAVNIGFQVTSVVPILNGMVRREVGVEVVGLGALNLTGYLREKMQQSNMHFESLYTVRLLKEKLCYVSLDYEAELLKDTQASFEGVEGLFTLSKERFQTAEILFQPRLAGLRGMSLHQAIALCMDHCYSAELAGNNDWFKTIVLSGGTACLPGLAERLEKELHSFLSPHMSNGIRVIPPPYGADTAWFGAKIIGSLSTFPGPWCTTKKQFRRKSKINRVW* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2959 462 PANTHER ACTIN-RELATED PROTEIN 8 87 458 - -
Lja4g2959 462 Gene3D Actin; Chain A, domain 4 273 355 - -
Lja4g2959 462 ProSiteProfiles F-box domain profile. 30 77 IPR001810 GO:0005515
Lja4g2959 462 SUPERFAMILY F-box domain 24 88 IPR036047 GO:0005515
Lja4g2959 462 SUPERFAMILY Actin-like ATPase domain 240 449 IPR043129 -
Lja4g2959 462 Gene3D - 230 427 - -
Lja4g2959 462 Gene3D - 171 452 - -
Lja4g2959 462 SUPERFAMILY Actin-like ATPase domain 125 245 IPR043129 -
Lja4g2959 462 SMART fbox_2 36 76 IPR001810 GO:0005515
Lja4g2959 462 Pfam F-box-like 34 77 IPR001810 GO:0005515
Lja4g2959 462 SMART actin_3 123 452 IPR004000 -
Lja4g2959 462 PANTHER ACTIN 87 458 IPR004000 -
Lja4g2959 462 CDD NBD_sugar-kinase_HSP70_actin 126 260 - -
Lja4g2959 462 Pfam Actin 172 448 IPR004000 -
Lja4g2959 462 Gene3D - 21 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2959 Lja-Chr4 54056030 54068654 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2959 172 445 Cytoskeleton Gene Families AT3G12110 31.449 1.56e-37 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2959 K16616 - gmx:100804254 700.279