Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lja4g2957 | ATGAGTTCGTTCTCCATCACACGGAAAAAGACGCCGTTCCAGAAGCATAGAGAAGAGGAGGAGGCAAAGAAGAAGAGAGCAGAAGATGAGACCGCTCGCTTGTATGCTGAATTTGTAGAGTCATTTCAAGGGGATATCACGCCTGGGTCAAAGACTTTTGTCCGAGGAGGAACAATCAATCCCAACGAAAAATTGAAAGATGATTCTGAGGGTGAAAAGTCCAAAGATGGGGTGTCTATTCCAAAGAAGGGAAGTAGGTATGTTCCATCTTTTATACCACCTCCACTGGCAACCAAGGGGAAGGAATCTGAAAGGAAAAAAGAAGAGGAAAAACCCAAGGAGAAAGAGAAAGGAAAGCCAAGGAACATTGATTTTTTTATGGAGGAGCTAAAGCATGAGCAAGAGATGAGGGAGAAACGAAATCAAGAACGTGAAAATTGGCGTGATGGGCTTCCGGTAGAACATTCTACTACTGTTAGTCGTTTTGATGAACTGCCTGATGATTTTGATCCAAGTGGAAAACTTCCAGGATCATTTGATGATGGTGATCCACAAACTACAAATCTTTATGTTGGAAATCTCTCGCCCAAGGTGGATGAAAATTTCCTTCTCCGTACTTTTGGAAGATTTGGACCTATTGCTAGTGTGAAAATCATGTGGCCTAGGACTGAGGAGGAGCGAAGGCGGCAAAGAAACTGTGGTTTTGTGGCTTTCATGAACCGAGCTGATGGACAGGCTGCTAAAGATGAAATGCAAGGAGTTGTGGTTTATGAATATGAATTAAAAATTGGGTGGGGAAAGTCTGTTGCGCTCCCGTCACAAGCATTACCTGCACCTCCACCGGGGCATATGGCCATCAGGAGTAAGGAGGGTAGTACTGTGATCTTGTCTGGCCCATCAGGTCCACCAGTAACGTCTGTGCCTAGTCAGAACTCTGAACTGGTTCTTACTCCTAATGTTCCTGATATAATGGTTACACCTCCTGAGGATGACCATCTAAGGCATTTAATTGATACTATGGCTTTGTATGTCCTGGATGGAGGATGTGCTTTTGAACAAGCAATTATGGAGAGGGGTCGTGGCAATCCTCTTTTTAATTTCTTATTTGTTCTTGGCTCGAAGGAACATACCTACTATGTTTGGAGACTCTACTCATTTGCTCAGGGTGACACTCTTCAAAGATGGCGGACTGAACCTTTTATCATGATAACGGGTAGTGGAAGGTGGATTCCTCCCCAATTACCACCATCGAGAAGTCCAGATCATGAAAAGGAGTCTGGTTCCACACACGCTGGAGGAAGAAGCAGGCGTGTAGAGCCTGAAAGAACATTGACTGATGCACAACGGGATGAGTTTGAAGATAGGCTGCGTGCTTTAACATTAGAGAGGAGCCAAATAAAAGAGGCTATGGGGTTTGCTTTGGATAATGCTGACGCAGCTGGGGAGATAGTTGAAGTTTTGACGGAATCCTTGACTCTTCGAGAAACTCCTATTCCAACGAAAATTGCAAGGCTTATGCTTGTCTCTGATATTCTTCATAATAGTAGTGCCCCTGTAAGAAATGCATCGGCATATCGGACAAAGTTTGAAGCAGCACTGCCTGACATAATGGAGAGTTTCAATGACTTGTATCGTAGTATAATGGGACGTATTACTGCAGAAGCCCTAAAGGAACGAGTCCTGAAAGTTCTGCAAGTGTGGGCCGACTGGTTTCTCTTTTCAGATGCTTATGTTAATGGCTTAAGAGCCACTTTCCTCCGACCTGGGAACTCTGGTGTGGTGCCATTCCATTCCATATGCGGTGATGCACCTGAGATTGAGCAGAAGATCACTTCTGAAGATACAGTTGTTGGTGGCAAGATCAACCAAGATGCTGCATTGGCAATGGGTCGAGGAGCTGCAACGCAGGAGCTAATGAATCTTCCTCTTGCTGAGCTAGAAAGGCGGTGCCGACACAATGGATTATCACTAGTTGGTGGTAGAGAAATCATGGTCGCAAGGTTGTTAAGTCTTGAAGAGGCAGAAAAACAGAGGGTTTATGAACTGGATGATGAATTGAAATATCCCCACGGCCAAGCTAGTTCTGCGAAATATTCAAGTGGTCGGCGAGAAACAAGTGCAGAGCTTGAACCAGTGGGATATTCTGGATGGAACCATTATGGGGATGATGATTTGCAATCACAAGGCAAAGAGTCTGTACCTTTAGCGCCAACTCTTCCTATTCCACAGCCTGAACTTAAAGCCTTCACAAAAAAGGAGAAGAATGACCCGGTTTTACCTGCCTCTAAATGGGCTCGGGAGGATGATGAGAGTGATGATGAGCAAAGAAGTGGAAAAAATCTCGGATTAAGCTACTCATCTTCTGGCAGTGAGAATGTGGGTGGTGGTCATATTAAAGCTGATGAATCAGAGTCTGCTGCTGATACAAGTTTTTCAGCTCATGCTGACAGTGGACTGAATGAAGAACAGAGACAAAAGTTGAGACGCTTGGAGGTTGCTTTGATTGAATATCGTGAGTCTCTTGAAGAAAGGGGAATCAAAAACTTGGAGGAAATTGAGAAGAAAGTTCAGACGCACCGGAAACGGCTGCAAGCGGAGTATGGGTTATCAGATTCTGGTGAAGATGGACAAGGCAATAGAAGATCATCTTCAGAGAGGAGGGATAGACATGATTTCTCGAGGAAACGGCACCGTAGCCCCAGTCCAAGGGGTAGTCCACAACACAGATTATCTAGCAAAGACAGAGATAGAGAACATGATTTAGAAAGGGATCGAGACCGACAAAGAGATAGAAGTCACGATTTTGATAGTGATAGAGGAAGGGACCGGCACCGGGAAAAGAGTGGAAGCAGGGACAGGGATGATCATGATAAGGATAGAAGCAGGGACCGGAGACGACGGGCGAAATAA | 2910 | 0.4495 | MSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDITPGSKTFVRGGTINPNEKLKDDSEGEKSKDGVSIPKKGSRYVPSFIPPPLATKGKESERKKEEEKPKEKEKGKPRNIDFFMEELKHEQEMREKRNQERENWRDGLPVEHSTTVSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGSTVILSGPSGPPVTSVPSQNSELVLTPNVPDIMVTPPEDDHLRHLIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFVLGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPQLPPSRSPDHEKESGSTHAGGRSRRVEPERTLTDAQRDEFEDRLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLRETPIPTKIARLMLVSDILHNSSAPVRNASAYRTKFEAALPDIMESFNDLYRSIMGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRPGNSGVVPFHSICGDAPEIEQKITSEDTVVGGKINQDAALAMGRGAATQELMNLPLAELERRCRHNGLSLVGGREIMVARLLSLEEAEKQRVYELDDELKYPHGQASSAKYSSGRRETSAELEPVGYSGWNHYGDDDLQSQGKESVPLAPTLPIPQPELKAFTKKEKNDPVLPASKWAREDDESDDEQRSGKNLGLSYSSSGSENVGGGHIKADESESAADTSFSAHADSGLNEEQRQKLRRLEVALIEYRESLEERGIKNLEEIEKKVQTHRKRLQAEYGLSDSGEDGQGNRRSSSERRDRHDFSRKRHRSPSPRGSPQHRLSSKDRDREHDLERDRDRQRDRSHDFDSDRGRDRHREKSGSRDRDDHDKDRSRDRRRRAK* | 970 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lja4g2957 | 969 | SUPERFAMILY | RNA-binding domain, RBD | 180 | 275 | IPR035979 | GO:0003676 | |
| Lja4g2957 | 969 | SUPERFAMILY | ENTH/VHS domain | 448 | 585 | IPR008942 | - | |
| Lja4g2957 | 969 | Gene3D | - | 444 | 590 | IPR008942 | - | |
| Lja4g2957 | 969 | Gene3D | - | 97 | 270 | IPR012677 | - | |
| Lja4g2957 | 969 | MobiDBLite | consensus disorder prediction | 747 | 777 | - | - | |
| Lja4g2957 | 969 | MobiDBLite | consensus disorder prediction | 418 | 446 | - | - | |
| Lja4g2957 | 969 | Coils | Coil | 846 | 866 | - | - | |
| Lja4g2957 | 969 | MobiDBLite | consensus disorder prediction | 61 | 80 | - | - | |
| Lja4g2957 | 969 | PANTHER | - | 5 | 966 | - | - | |
| Lja4g2957 | 969 | SMART | surpneu2 | 334 | 388 | IPR000061 | GO:0003723|GO:0006396 | |
| Lja4g2957 | 969 | Coils | Coil | 820 | 840 | - | - | |
| Lja4g2957 | 969 | Coils | Coil | 449 | 469 | - | - | |
| Lja4g2957 | 969 | ProSiteProfiles | CID domain profile. | 444 | 589 | IPR006569 | - | |
| Lja4g2957 | 969 | MobiDBLite | consensus disorder prediction | 408 | 446 | - | - | |
| Lja4g2957 | 969 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 187 | 268 | IPR000504 | GO:0003723 | |
| Lja4g2957 | 969 | MobiDBLite | consensus disorder prediction | 99 | 121 | - | - | |
| Lja4g2957 | 969 | Pfam | CID domain | 451 | 579 | IPR006569 | - | |
| Lja4g2957 | 969 | Pfam | cwf21 domain | 820 | 866 | IPR013170 | - | |
| Lja4g2957 | 969 | SMART | cwf21_2 | 819 | 868 | IPR013170 | - | |
| Lja4g2957 | 969 | MobiDBLite | consensus disorder prediction | 857 | 969 | - | - | |
| Lja4g2957 | 969 | Coils | Coil | 17 | 37 | - | - | |
| Lja4g2957 | 969 | MobiDBLite | consensus disorder prediction | 778 | 793 | - | - | |
| Lja4g2957 | 969 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
| Lja4g2957 | 969 | SUPERFAMILY | Surp module (SWAP domain) | 309 | 391 | IPR035967 | GO:0003723|GO:0006396 | |
| Lja4g2957 | 969 | ProSiteProfiles | SURP motif repeat profile. | 336 | 379 | IPR000061 | GO:0003723|GO:0006396 | |
| Lja4g2957 | 969 | MobiDBLite | consensus disorder prediction | 712 | 824 | - | - | |
| Lja4g2957 | 969 | MobiDBLite | consensus disorder prediction | 45 | 121 | - | - | |
| Lja4g2957 | 969 | CDD | RRM_SR140 | 186 | 269 | IPR035009 | - | |
| Lja4g2957 | 969 | MobiDBLite | consensus disorder prediction | 908 | 962 | - | - | |
| Lja4g2957 | 969 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 189 | 261 | IPR000504 | GO:0003723 | |
| Lja4g2957 | 969 | Gene3D | - | 819 | 870 | - | - | |
| Lja4g2957 | 969 | MobiDBLite | consensus disorder prediction | 11 | 30 | - | - | |
| Lja4g2957 | 969 | PANTHER | RNA PROCESSING PROTEIN LD23810P | 5 | 966 | - | - | |
| Lja4g2957 | 969 | Pfam | Surp module | 334 | 386 | IPR000061 | GO:0003723|GO:0006396 | |
| Lja4g2957 | 969 | Gene3D | Surp module | 322 | 391 | IPR035967 | GO:0003723|GO:0006396 | |
| Lja4g2957 | 969 | SMART | 558neu5 | 451 | 586 | IPR006569 | - | |
| Lja4g2957 | 969 | SMART | rrm1_1 | 188 | 264 | IPR000504 | GO:0003723 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lja4g2957 | 184 | 264 | Eukaryotic Initiation Factors Gene Family | AT1G71770 | 32.099 | 3.03e-06 | 49.3 |