Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2954 ATGGGTAGCAGTGACGCGGATAAACCCCCGAAAGAGAAGGAGTCCAAAACACCTCCGTCGACGTCACAGGAGCAGTCTCCAACAACTGGAGCTGGACCGGTTAATCCCGACTGGGCTAACTTTCAGGCATATTCTCATATACCTCCACATGGGTTCATGGCATCAGGTCCTCAAGCCCACCCATATATGTGGGGTGTCCAGCATATTGTGCCTCCCTATGGCACCCCACCACATCCCTATGTTGCAATGTATCCCCATGGTGGCATATATGCTCATCCATCCATGCCTCCGGGATCTTATCCTTTTAGTCCTTACGCCATGCCTTCTCCAAATGGTGTTGCAGATGCGTCGGGAAATACTCCAGTCATCAATGAAGCTCATGTTAAGCCTCCTGAGATGAAGGAAAAATTACCAATCAAAAGATCAAAAGGCAGTTTGGGTAGTTTGAATATGATTACAAGAAAAAGTAATGAACCTCGTAAAACACCAGCAACATCTGCCAATGGAATTCATTCCCAAAGTGGTGAGAGTGCAAGTGAAGGTACTAGTGAAGGAAGTGATGAGAACTCCCAGAATGACTCTCAATTAAAATCTGGGGAGAGGCAGGATTCTTTTGAAGATGAACCCTCTCAAAATGGCAGTTCAGTGCATGCTCCACAAAATGGGGTACTTCATACACCTCATATGGTTATTAACCAAACTATGGCCATTGCAACTATACCTGCTTCTGGTGGTCCTGCAACTAATTTGAATATTGGAATGGATTATTGGGGCGCACCAACTGCACTGCATGGAAATGTCCCTTCTCCTGCAATTGCTGGTGGGATAGTTAATACCGGGTCACGTGAGGGTGTTCAGCCACAAGTGTGGCTACAGGATGAAAGAGAGCTTAAAAGACAAAGGCGCAAGCAGTCTAATAGGGAATCTGCACGCAGATCCAGGTTGCGAAAGCAGGCTGAATGTGATGAACTAGCCCAGCGTGCTGATGTGTTGAAAGAAGAAAATGCTTCTCTCCGATCTGAAGTGACCCAGATCAGGAGCGACTACGAGCAGCTACTCTCTGAGAATGCAGTACTCAAGGAGCGACTTGGGCAGATACCTGGGAAAGAAGATCTCAGGTCGGGCCAGAATGATCAGCCTGTATGTAGTGACACTCAACAGAGTGATCAGACAGTGGCTGTGCAGGGCATTCATTAG 1197 0.4728 MGSSDADKPPKEKESKTPPSTSQEQSPTTGAGPVNPDWANFQAYSHIPPHGFMASGPQAHPYMWGVQHIVPPYGTPPHPYVAMYPHGGIYAHPSMPPGSYPFSPYAMPSPNGVADASGNTPVINEAHVKPPEMKEKLPIKRSKGSLGSLNMITRKSNEPRKTPATSANGIHSQSGESASEGTSEGSDENSQNDSQLKSGERQDSFEDEPSQNGSSVHAPQNGVLHTPHMVINQTMAIATIPASGGPATNLNIGMDYWGAPTALHGNVPSPAIAGGIVNTGSREGVQPQVWLQDERELKRQRRKQSNRESARRSRLRKQAECDELAQRADVLKEENASLRSEVTQIRSDYEQLLSENAVLKERLGQIPGKEDLRSGQNDQPVCSDTQQSDQTVAVQGIH* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2954 398 MobiDBLite consensus disorder prediction 1 40 - -
Lja4g2954 398 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 301 316 IPR004827 GO:0003700|GO:0006355
Lja4g2954 398 SUPERFAMILY Leucine zipper domain 297 353 IPR046347 GO:0003700|GO:0006355
Lja4g2954 398 MobiDBLite consensus disorder prediction 376 398 - -
Lja4g2954 398 PANTHER BZIP TRANSCRIPTION FACTOR FAMILY PROTEIN 1 398 - -
Lja4g2954 398 MobiDBLite consensus disorder prediction 146 198 - -
Lja4g2954 398 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 296 359 IPR004827 GO:0003700|GO:0006355
Lja4g2954 398 SMART brlzneu 294 358 IPR004827 GO:0003700|GO:0006355
Lja4g2954 398 MobiDBLite consensus disorder prediction 19 35 - -
Lja4g2954 398 MobiDBLite consensus disorder prediction 127 222 - -
Lja4g2954 398 MobiDBLite consensus disorder prediction 1 18 - -
Lja4g2954 398 CDD bZIP_plant_GBF1 299 349 IPR045314 GO:0003700|GO:0006355
Lja4g2954 398 Pfam Disordered region downstream of MFMR 135 262 - -
Lja4g2954 398 Coils Coil 314 362 - -
Lja4g2954 398 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 398 IPR044827 GO:0003700|GO:0006355|GO:0043565
Lja4g2954 398 MobiDBLite consensus disorder prediction 208 222 - -
Lja4g2954 398 MobiDBLite consensus disorder prediction 287 318 - -
Lja4g2954 398 MobiDBLite consensus disorder prediction 367 398 - -
Lja4g2954 398 Pfam G-box binding protein MFMR 1 96 IPR012900 -
Lja4g2954 398 Gene3D - 297 366 - -
Lja4g2954 398 Pfam bZIP transcription factor 294 356 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2954 Lja-Chr4 53967634 53975154 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2954 1 372 bZIP Transcription Factor Family AT2G35530 60.724 1.22e-150 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lja4g2954 MFMR_assoc 4.5e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2954 K09060 - gmx:100101912 613.994