Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2950 ATGGAGAAACTGAAATCATCTGCTAATTATGACCCTGGTGCCAGCAGTGATGAACCAGGTTCATTTCCAATATTCAAACTCTCAGAGACTCAGCATGAAGATGAAGCAGGAAATGTTTCCAAGCAAGATAGAGCTTCGGTAAAAGCTCCCTCTAACTCTGGAACCAGCAGTAGTAGTAGCAAACCTGTGAACAAGTGGATGGCATTTGATAAGAAACCTGATGATGTTGATGATGCAACTACAAAGGGTCCTCCTTCAGCTAAAAACATGTTGAAAGACAGTGAAGAAGCAATCATAGAAGAGAGAGCTGCTGAGTGGGGTCTTGTGGTGAACTCAGGAAATTTCAAAGCAGCAGTAGTAGAGGCTAGTAACTCTTTTGAGGGTGACAGGAGCAAAAACTTTTCAGATAGGTTTGTTGAGTCAACAAGGACTTCTGGTGAATCAAATCGTGGGTCAGAGTCATCATCAGGGTTGTTTCCAAGGGTATCACAGGAGTTGAAGGAAGCATTGGGTTCTCTGCAACAGACATTTGTTGTCTCAGATGCAACCAAACCAGATTGTCCAATCATGTTTGCCAGCAGTGGATTTTTCACCATGACTGGTTATTCTTCAAAGGAGATTATTGGAAAGAATTGCCGATTTCTTCAGGGGCCTGAAACAGACCAGAATGAAGTGGCAAAAATTCGTGATGCAACTAAAAATGGGAAGAGTTATTGTGGCAGGCTTTTAAACTACAAGAAAGATGGAACTCCTTTTTGGAATCTTCTCACTGTAACTCCCATCAAGGATGACCATGGAAAGACTATCAAATTCATTGGAATGCAGGTTGAGGTGAGCAAGTTCACAGAAGGCGTGAATGAAAAGGCGCTACGACCAAATGGATTGCCGAAGTCCTTAATTCGTTATGATGCTCGTCAAAAGGAGAGAGCTATGGGTTCCATCACTGAGGTTGTCCAAACTGTTAAGAACCCAAAATCGACTATTCGGGCTAAGAATGATGACACTTCCACCAAGCATGAAGAGAAAGAGAAAATGAATTATGATTTTGCTCTTCCAAAGCTTGTTGAAACTGGGATTACTAGCACACCTAGCAGACAAACTTCTTCATTGAACTTTCAAGGTGATCATGTGTCAAGGGTGAGTTCTTATGAGGGAAGGAGCAAGATATCAAGAAAATCAGAAAAAGGTTTGAAAGGGAAATCTATGAGTTCTATAGAGAGAGGTAAGGAGAGGCTGATTGTTGAACCCGAGGTATTGATGACAAAGGAAATCGAAGGGTTCAACAGGCGGGAGAGTGCACAAAGAGAGAGGGATATAAGGCAGGGGATTGATCTAGCAACCACATTGGAGCGGATAGAAAAGAACTTTGTGATTTCTGATCCTAGACTTCCAGATAACCCAATTATATTTGCATCAGATAGTTTTCTTGAACTTACAGAATATACAAGAGAGGAAATTTTGGGTCGAAACTGCAGGTTTCTTCAAGGACCAGAAACCGATCAGGCAACTGTTGAAAACATTAGAGTTGCAATCAGAGAACAAAAAGAAATCACTGTTCAGTTGATCAACTATACTAAGAGTGGAAAGAAATTCTGGAATTTGTTTCACTTGCAACCTATGCGTGACCACAAGGGTGAACTTCAATACTTCATTGGTGTTCAATTAGATGGAAGTGATCATATAGAACCCTTAAGAAACCGCCTTTCTGAAGGAGCTGAGCAGCAAAGTGCCAAGTTGGTTAAAGCCACTGCAGAAAATGTTGATGAAGCTGTCCGAGAACTTCCTGATGCCAACTTGAGACCAGAAGATTTGTGGTCAATTCATTCTCAACCAGTCTCTCCGCGACCTCACAAAAAGGACCATCCTTCTTGGTTAGCAATACAGAAGATTGCTGCAAAAGGTGAAAAAATTGGACTGCATCATTTTTTGCCCATCAGGCCATTGGGTTGTGGAGACACTGGCAGTGTTCATTTGGTGGAACTCCAAGGCACTGGGGAACTATATGCAATGAAGGCAATGGAAAAGGCTGCACTTCTAAATCGTAATAAGGTTCACCGAGCATGTGTTGAACGAGAGATTATATCATTACTGGATCATCCTTTTCTTCCAACACTATACACCTCATTTCAGACTTCGACACATGTTTGCTTGATTACTGACTTTTGCGCCGGGGGAGAGTTGTTTGCATTACTTGACAAGCAACCAATGAAAATTTTCAATGAAGAATCATCAAGATTCTATGCAGCGGAGGTTGTCATTGGTTTGGAATATCTCCACTGTTTAGGTATAATTTATCGTGACTTAAAGCCTGAAAATGTCTTACTTCAGAAAGATGGCCATGTTGTATTAACTGATTTTGATCTATCGTTTATGACATCTTGTAAACCCCAGGTTGTGAAGCACTCACTACCTGGTAAGAGAAGATCACGGAGTCAACCGCCACCAACATTCGTTGCAGAGCCAGATACGCAGTCAAATTCATTTGTTGGGACTGAAGAATATATTGCTCCTGAAATTATAACCGGAGCTGGGCATTCTAGTGCTATAGATTGGTGGACCCTTGGTATCTTGTTGTATGAGATGCTCTATGGTCGGACACCTTTCAGAGGAAAGAATAGACAGAAGACATTTTCCAACATCTTATACAAGGATCTTACCTTTCCAAGCAGCATCCCGGTTAGTCTAGCAGCGAGGCAGTTGATTAATGCGCTATTGCAAAGAGACCCAGCCAGTCGACTAGGGTCAACTACTGGAGCCAATGAAATCAAACAACATCCTTTTTTCCGTGAAATCAATTGGCCTTTAATCCGCAACATGAGTCCACCCCCATTAGACGTTCCTCTTCAATTGATAGGAAAAGATCCTGTGGCAAAGAATATAAATTGGGAAGATGATGGGGTGCTTGTTAGCTCCGTTGATATGGATATTTTTTGA 2934 0.4168 MEKLKSSANYDPGASSDEPGSFPIFKLSETQHEDEAGNVSKQDRASVKAPSNSGTSSSSSKPVNKWMAFDKKPDDVDDATTKGPPSAKNMLKDSEEAIIEERAAEWGLVVNSGNFKAAVVEASNSFEGDRSKNFSDRFVESTRTSGESNRGSESSSGLFPRVSQELKEALGSLQQTFVVSDATKPDCPIMFASSGFFTMTGYSSKEIIGKNCRFLQGPETDQNEVAKIRDATKNGKSYCGRLLNYKKDGTPFWNLLTVTPIKDDHGKTIKFIGMQVEVSKFTEGVNEKALRPNGLPKSLIRYDARQKERAMGSITEVVQTVKNPKSTIRAKNDDTSTKHEEKEKMNYDFALPKLVETGITSTPSRQTSSLNFQGDHVSRVSSYEGRSKISRKSEKGLKGKSMSSIERGKERLIVEPEVLMTKEIEGFNRRESAQRERDIRQGIDLATTLERIEKNFVISDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQATVENIRVAIREQKEITVQLINYTKSGKKFWNLFHLQPMRDHKGELQYFIGVQLDGSDHIEPLRNRLSEGAEQQSAKLVKATAENVDEAVRELPDANLRPEDLWSIHSQPVSPRPHKKDHPSWLAIQKIAAKGEKIGLHHFLPIRPLGCGDTGSVHLVELQGTGELYAMKAMEKAALLNRNKVHRACVEREIISLLDHPFLPTLYTSFQTSTHVCLITDFCAGGELFALLDKQPMKIFNEESSRFYAAEVVIGLEYLHCLGIIYRDLKPENVLLQKDGHVVLTDFDLSFMTSCKPQVVKHSLPGKRRSRSQPPPTFVAEPDTQSNSFVGTEEYIAPEIITGAGHSSAIDWWTLGILLYEMLYGRTPFRGKNRQKTFSNILYKDLTFPSSIPVSLAARQLINALLQRDPASRLGSTTGANEIKQHPFFREINWPLIRNMSPPPLDVPLQLIGKDPVAKNINWEDDGVLVSSVDMDIF* 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2950 977 MobiDBLite consensus disorder prediction 1 92 - -
Lja4g2950 977 Gene3D Transferase(Phosphotransferase) domain 1 726 942 - -
Lja4g2950 977 CDD STKc_phototropin_like 640 951 - -
Lja4g2950 977 MobiDBLite consensus disorder prediction 44 64 - -
Lja4g2950 977 SMART pas_2 443 512 IPR000014 -
Lja4g2950 977 SMART pas_2 164 233 IPR000014 -
Lja4g2950 977 Pfam PAS domain 464 556 IPR000014 -
Lja4g2950 977 Pfam PAS domain 183 279 IPR000014 -
Lja4g2950 977 MobiDBLite consensus disorder prediction 360 404 - -
Lja4g2950 977 Pfam Protein kinase domain 645 928 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2950 977 SMART pac_2 518 560 IPR001610 -
Lja4g2950 977 SMART pac_2 239 281 IPR001610 -
Lja4g2950 977 ProSiteProfiles PAC domain profile. 515 569 IPR000700 -
Lja4g2950 977 CDD PAS 189 278 IPR000014 -
Lja4g2950 977 TIGRFAM sensory_box: PAS domain S-box protein 189 279 IPR000014 -
Lja4g2950 977 TIGRFAM sensory_box: PAS domain S-box protein 467 556 IPR000014 -
Lja4g2950 977 ProSitePatterns Protein kinases ATP-binding region signature. 648 671 IPR017441 GO:0005524
Lja4g2950 977 SMART serkin_6 642 928 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2950 977 MobiDBLite consensus disorder prediction 381 404 - -
Lja4g2950 977 MobiDBLite consensus disorder prediction 801 824 - -
Lja4g2950 977 Gene3D PAS domain 430 594 - -
Lja4g2950 977 PANTHER FLIPPASE KINASE 1-RELATED 121 976 - -
Lja4g2950 977 MobiDBLite consensus disorder prediction 360 380 - -
Lja4g2950 977 Gene3D PAS domain 176 349 - -
Lja4g2950 977 SUPERFAMILY PYP-like sensor domain (PAS domain) 183 275 IPR035965 -
Lja4g2950 977 MobiDBLite consensus disorder prediction 139 159 - -
Lja4g2950 977 ProSiteProfiles PAS repeat profile. 441 514 IPR000014 -
Lja4g2950 977 ProSiteProfiles Protein kinase domain profile. 642 928 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2950 977 ProSitePatterns Serine/Threonine protein kinases active-site signature. 763 775 IPR008271 GO:0004672|GO:0006468
Lja4g2950 977 SUPERFAMILY Protein kinase-like (PK-like) 620 952 IPR011009 -
Lja4g2950 977 CDD PAS 464 556 IPR000014 -
Lja4g2950 977 PANTHER BNAA02G07840D PROTEIN 121 976 - -
Lja4g2950 977 MobiDBLite consensus disorder prediction 67 81 - -
Lja4g2950 977 ProSiteProfiles PAS repeat profile. 162 235 IPR000014 -
Lja4g2950 977 SUPERFAMILY PYP-like sensor domain (PAS domain) 460 556 IPR035965 -
Lja4g2950 977 Gene3D Phosphorylase Kinase; domain 1 641 725 - -
Lja4g2950 977 ProSiteProfiles PAC domain profile. 236 290 IPR000700 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2950 Lja-Chr4 53877228 53900859 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2950 54 976 AGC Kinase Gene Family AT5G58140 71.013 0.0 1299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Lja4g2950 Pkinase 2.5e-59 CL0016