Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2930 ATGGCTCGCTCTTTGCCTTTGGTTTCCACCATCTTTGTCTTCCTTCTGCTTCTCGTGGCCACTGAGATGGGGCCAACAATGGTGGCAGAAGCTAGAGATTGTGAGTCTCAGAGTCACCGCTTCAAAGGACCATGTGTGAGTGACACCAATTGTGCCTCTGTTTGTCATGGAGAAAAATTCTCTGGAGGACATTGTCGTGGTTTCCGTCGCAGATGCTTCTGCACTAAACACTGTTAA 237 0.4852 MARSLPLVSTIFVFLLLLVATEMGPTMVAEARDCESQSHRFKGPCVSDTNCASVCHGEKFSGGHCRGFRRRCFCTKHC* 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2930 78 ProSitePatterns Gamma-thionins family signature. 32 55 IPR008176 GO:0006952
Lja4g2930 78 PRINTS Purothionin signature 33 48 IPR008176 GO:0006952
Lja4g2930 78 PRINTS Purothionin signature 63 77 IPR008176 GO:0006952
Lja4g2930 78 PANTHER DEFENSIN-LIKE PROTEIN P322 1 78 - -
Lja4g2930 78 CDD Knot1 43 75 IPR003614 GO:0006952
Lja4g2930 78 PANTHER DEFENSIN-LIKE PROTEIN 1 1 78 - -
Lja4g2930 78 SUPERFAMILY Scorpion toxin-like 33 78 IPR036574 -
Lja4g2930 78 SMART gth_4 33 78 IPR003614 GO:0006952
Lja4g2930 78 Pfam Gamma-thionin family 33 78 - -
Lja4g2930 78 Gene3D - 32 78 IPR036574 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2930 Lja-Chr4 53303702 53305003 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2930 1 78 Plant Defensins Gene Families AT2G02100 64.103 4.01e-33 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2930 - - gmx:547843 141.739