Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2929 ATGGATTCTCTCCTCTCCCTTCAAATCCCACCTAACACCTTCCCTCACCCACTCCCAACCACCCCCAATTCCGCCGTGGCTCCACCCACACCCACCCCCATTGCCGTCGGAACCTCAATTCCAAACCTGCTTGTCCCAAAATCCGAACCATTGGACGATTTCTTCGCCACCCAGAACCACCAACAACCCCACCATGCGGCGGAGGACGATGAACCCGATATATACGGCGAGTTCTACCGGCTATCCCAGCTCTTCCATGCCGCCATCAACAAAACCCTACCCCAGTTTGGAGCCGAGAATACCAACACTCCACACCAGGACCTTGTTTTGCTCTTCGGGAATCCCAAGATTCCTGTTCCGGGCATGTTTTCAAACTCTGGAAGCGGCCATGTCGTGGATCCTGAAGTAGTTGTTGTGGGGGATCAGAATTCGCTGTCCGGGGACGGCAATGCTGCTGTTTCTGACCAGAGTTCGCGGGCGATCGTGCCTGTTCCGGCGGCCTCGCCGTCGTCTTCGGCGGTGTCGGTGAGGCGGAGGAACAGTAGCAAGGTGAAGGAGCTGGTGAGGGTGATGGATTTAAGTGGGAAGGATCAGATGCATTTCCGCCAGGAGGTGAGGCAGACGAGGATGATCTATGATTCCCTGCGTGTGCTGGCTGTGGTGGAGGAGGAGAAGAGGGCGGCTGAGGAGAAGAGGGCGGCTGAGGAGAAGAGGGTGTCTGAGGAGAAGAGGGTGGCTGAGGAGAAGAGAGCAGCTGAGGAGCTGAATGCGGCGGCTGCCGCGCAACTTGCGGCCGAGCAACTCGCATCCTATCCGGAGGCTGGTCCTGTCGCTGCTTCCTATCCGGAGGCTGTTCCTGTCGCTGCTGCTGTGCCGGAGGCTGCTCCAGTTGGCCGGCGCCACCGCTACCGCATAAGAGGGGACCTGAGGGCAGCGGCATTGATGAGGGAGCGGGGTTTGTGGATGAACCGTGCTAAAAGGATTGTTGGGGCGATTCCTGGTGTGTTTGTTGGGGATTTGTTTCTTTTCAGGATGGAGTTGTGCGTGGTTGGGTTGCATGGTCAGATACAGGCTGGGATTGATTATCTTCCTGCTAGCATGTGCTCCAATGGAGAGCCAATTGCCACTAGTGTCATTGTTTCGGGTGGATATGAGGATGACATGGATGATGGTGAGGAGATAATCTACACTGGCCATGGAGGGCAGGGGAAGAATTCGTTTAAGCAAGTGTGTGATCAGAAGTTGGAGGGAGGGAACCTTGCTTTGGAAAGGAGTATGCATTATGGGATCGAGGTAAGGGTGATTCGAGGGATGAGGGATGAGGGGAGTGCTTCAGCTGCAGGTAAGGTTTATGTTTATGATGGATTGTATAAGATTGTTGCTTGCTGGTTCGATGTGGGGAAGTCTGGTTTTGGAGTTTATAAGTTTAAGCTTACGAGGATTGAGGGGCAACCTAAGATGGGTAGTGCTTTTTTGAAAGAGGCTAGGGAGATTAGAAGAAATGGCTTGGACTTCAAACCTACGCATTGTCTTTCTGTGGATATTTCAAACAAGAAGGAGAATGTTGCTATTCGGCTTTTTAATGACATCGATGACAATCAGGACCCTCTTTATTTTGAGTATCTTCCGCGGACTATTTTCCCTCAGTTTGTGTTTCATCAGAGTGGGAATGCTACTGGTTGTGATTGTATAGATGGTTGTGTTGATGGCTGCTTTTGCTCTATGAAAAATGGGGGCGAGCTCCCTTATAATCAACATGGGTTTCTTGTGAGGGGAAAGCCTTTGATTTTTGAATGTGGCCCTTTTTGCAGCTGTCCTCCTCATTGTCGCAATCGTGCTACCCAAAAAGGTCTGAAAAGTAGGTTAGAAGTGTTTCGGTCTGTGCAGACGGGTTGGGGAGTTAGGTCCTTAGACATTATTCATGCTGGTGCTTTTATCTGTGAGTATACAGGGGTTGTTTTGACTAGGGAGCAAGCGCAAATTTTAACAATGAATGGTGACTCATTGATATATCCTAATCGGTTTGCGTCAAAATGGGCAGAATGGGGGGATTTATCTCAGGTATACCCTGATTATAAGATCCCATCATATCCTGAGGTGCCTCCTTTAGATTATTCTCTGGATGTGTCAACTATGAGGAATGTTGCTTGCTATATTAGTCATAGTTCATCCCCAAATGTATTAGTTCAGTTTGTTCTGCATGATCACAACAATTTGATGTTCCCTCACCTTATGCTATTTGCAATGGAGAACATCCCTCCAATGAGAGAACTCAGCCTTGATTATGGTGTAGCTGATGAGTGGACAGGCAAGCTCTCTATATGTAATGTAACTGAGTGA 2340 0.4983 MDSLLSLQIPPNTFPHPLPTTPNSAVAPPTPTPIAVGTSIPNLLVPKSEPLDDFFATQNHQQPHHAAEDDEPDIYGEFYRLSQLFHAAINKTLPQFGAENTNTPHQDLVLLFGNPKIPVPGMFSNSGSGHVVDPEVVVVGDQNSLSGDGNAAVSDQSSRAIVPVPAASPSSSAVSVRRRNSSKVKELVRVMDLSGKDQMHFRQEVRQTRMIYDSLRVLAVVEEEKRAAEEKRAAEEKRVSEEKRVAEEKRAAEELNAAAAAQLAAEQLASYPEAGPVAASYPEAVPVAAAVPEAAPVGRRHRYRIRGDLRAAALMRERGLWMNRAKRIVGAIPGVFVGDLFLFRMELCVVGLHGQIQAGIDYLPASMCSNGEPIATSVIVSGGYEDDMDDGEEIIYTGHGGQGKNSFKQVCDQKLEGGNLALERSMHYGIEVRVIRGMRDEGSASAAGKVYVYDGLYKIVACWFDVGKSGFGVYKFKLTRIEGQPKMGSAFLKEAREIRRNGLDFKPTHCLSVDISNKKENVAIRLFNDIDDNQDPLYFEYLPRTIFPQFVFHQSGNATGCDCIDGCVDGCFCSMKNGGELPYNQHGFLVRGKPLIFECGPFCSCPPHCRNRATQKGLKSRLEVFRSVQTGWGVRSLDIIHAGAFICEYTGVVLTREQAQILTMNGDSLIYPNRFASKWAEWGDLSQVYPDYKIPSYPEVPPLDYSLDVSTMRNVACYISHSSSPNVLVQFVLHDHNNLMFPHLMLFAMENIPPMRELSLDYGVADEWTGKLSICNVTE* 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2929 779 SMART G9a_1 325 484 IPR003105 -
Lja4g2929 779 Coils Coil 218 258 - -
Lja4g2929 779 Pfam Pre-SET motif 515 612 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lja4g2929 779 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE FAMILY MEMBER SUVH2-RELATED 39 773 - -
Lja4g2929 779 MobiDBLite consensus disorder prediction 1 33 - -
Lja4g2929 779 Gene3D - 327 488 IPR036987 -
Lja4g2929 779 SUPERFAMILY SET domain 505 775 IPR046341 -
Lja4g2929 779 ProSiteProfiles SET domain profile. 620 763 IPR001214 GO:0005515
Lja4g2929 779 SMART preset_2 512 604 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lja4g2929 779 ProSiteProfiles YDG domain profile. 330 480 IPR003105 -
Lja4g2929 779 MobiDBLite consensus disorder prediction 12 29 - -
Lja4g2929 779 SMART set_7 620 769 IPR001214 GO:0005515
Lja4g2929 779 Pfam SAD/SRA domain 329 484 IPR003105 -
Lja4g2929 779 Pfam SET domain 631 763 IPR001214 GO:0005515
Lja4g2929 779 ProSiteProfiles Pre-SET domain profile. 559 617 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lja4g2929 779 Gene3D SET domain 489 776 IPR046341 -
Lja4g2929 779 SUPERFAMILY PUA domain-like 311 493 IPR015947 -
Lja4g2929 779 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 94 778 IPR025794 GO:0016571
Lja4g2929 779 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 39 773 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2929 Lja-Chr4 53205237 53213401 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2929 310 765 Su(var)3-9 homologs AT1G73100 41.290 1.12e-104 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lja4g2929 SAD_SRA 2e-49 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2929 K11420 - aip:107626851 832.402