Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2915 ATGTATGAACAAAGTAGTTGCTTTGATCCTGATCCTATGATTGTACATGGCACCCAAATCGTTTCAGAATCAGACCCTCCAATTGAAGCAGTTATAACTGGCACTGCAACAAGGACCAACCACAGGTTTGCAGAGAATGTGGGTCTTTCTGTGGAAAGTTTGTCACACCCATATTCCTCTGGTGAAGATGCTATAACTGTTGCTGCTTCTGTTGATACCACTACAATGGAGATCACAGCCTCACACCCCCAACAAATGGATTTTCACAAGGAAAATGAAAATCCATACAACAATCACAGCAATGGCTTCAACAATGGTTCAAGTCATGACCTTTCCTTTCACCAAAACCAGCATTTTCCTTATACCATACCAACACCAGATCTTCTCAACCTTATGCCAAGAACCCAAGCCTTTCCATTTGGGAACTCCTCTGTTTCTTTTGAAAACACAAACTTGCCTGTTTTCTATGACCCTTTGTTGCATTTGAACCTGCCACAAGCACCTCCTCCACCCCATGGATACTACAATAACAACAACACCATTCCACCTTCAAGGAATGGAAGTTTTGTCTTTGGGGAAGAGGAATATGGCATGGAACAAGATGGGAGAGCTTTTGGGAATGGGGTGTTAGAGTTCACTCAGGATGTGACTTGTGCTGGTAAAAAGAGAGGAGGGAAAAGGGTCAAGCAAGTCACTGTTACCACTGAGAGACAAAGGAGAGAGGATTTGAGTAGCAAGTTTGATGCTTTGAAAGATCTCATCCCAAACCCCACAAAGACTGATAGAGCATCTGTGGTGGGAGATGCTATTGACTACATCAGAGAGCTTCTAAGGACAGTGAGTGAGCTGAAATTGCTGGCTGAGAAGAAAAGGCATGAGAAACAAAGGATCAAGAGGCAGAAGGTTGAAGAAGGTGACTTGAAGATGGTTCCAATTGGTGACTCAGATGAACACTCTTACAATGAAAGCTTGAGAAGTTCTTGGATACAGAGGAAATCCAAAGACACTGAGGTTGAAGTGAGGATTATTGATGATGAGGTAACAGTAAAGCTTGTTCAGAGGAAGAAGATCAATTGCTTGTGGTATGCTTCACATGTTCTGGAAGAACTTAAGCTGGATCTTCAACATGTTTCTGGTGGACACATTGGAGATTTCTGCAGCTTTTTGCTCAATAGCAAGATATGTGAAGGTTCCTCTGTTTATGCAAGTGCCATTGCCAGCAAACTCATTGAGGTATTGGACACAAGCTTTTCAGCAGCATGA 1263 0.4268 MYEQSSCFDPDPMIVHGTQIVSESDPPIEAVITGTATRTNHRFAENVGLSVESLSHPYSSGEDAITVAASVDTTTMEITASHPQQMDFHKENENPYNNHSNGFNNGSSHDLSFHQNQHFPYTIPTPDLLNLMPRTQAFPFGNSSVSFENTNLPVFYDPLLHLNLPQAPPPPHGYYNNNNTIPPSRNGSFVFGEEEYGMEQDGRAFGNGVLEFTQDVTCAGKKRGGKRVKQVTVTTERQRREDLSSKFDALKDLIPNPTKTDRASVVGDAIDYIRELLRTVSELKLLAEKKRHEKQRIKRQKVEEGDLKMVPIGDSDEHSYNESLRSSWIQRKSKDTEVEVRIIDDEVTVKLVQRKKINCLWYASHVLEELKLDLQHVSGGHIGDFCSFLLNSKICEGSSVYASAIASKLIEVLDTSFSAA* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2915 420 Gene3D - 220 305 IPR036638 GO:0046983
Lja4g2915 420 Pfam Helix-loop-helix DNA-binding domain 235 276 IPR011598 GO:0046983
Lja4g2915 420 PANTHER TRANSCRIPTION FACTOR BHLH91 1 416 IPR045895 GO:0006355|GO:0048658
Lja4g2915 420 CDD bHLH_AtMYC1_like 232 292 IPR045896 -
Lja4g2915 420 Coils Coil 273 303 - -
Lja4g2915 420 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 227 276 IPR011598 GO:0046983
Lja4g2915 420 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 226 296 IPR036638 GO:0046983
Lja4g2915 420 SMART finulus 233 282 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2915 Lja-Chr4 52793460 52795181 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2915 1 420 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G06170 39.318 1.28e-78 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja4g2915 HLH 1.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2915 - - vra:106767981 366.696