Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2913 ATGGCACAAGATAATTCTGGTGCTGATTGCTGTCTTGGTCTCATAAGAGATCAAGTTCGCTTGGTTAAAAGGAAACACTCTGATCGCTATGAGGTTGCTCCAATCCATGACCAATTATCATTTGAGAAGGGGTATTTCGTAGTATTCCACGCATGCCAATTGTTGGTCCAAAAGAATGATGGAATAATATTGGTAGGGGTGGCAGGTCCTTCAGGGGCTGGGAAGACTGCATTTACTGAAAAGATACTCAACATCTTGCCAGGCATTGCAGTCATTTCAATGGACAATTACAATGACTCTAGTCAAATTGTTGATGGAAACTTTGATGATCCACGCGTAACAGATTATGAAACATTGCTCCGAAATATACGTGATTTAAAGGAAGGAAAGCCAGTGCAAGTTCCTATATATGATTTCAAATCCAGTTCACGTACAGGATACAGGACAGTAGATGTGCCAAGCTCTCGAATTGTGATTATAGAGGGCATTTATGCATTGAGTGAGAAGTTGAGGCTTCTATTGGACCTTCGAGTATCTGTAACAGGCGGCGTTCACCTTGACCTTGTTAAACGAGTTATACGTGATATACAACGTGCTGGTCAAGAACCTGAAGAAATTATTCATCAAATATCTGAGACGGTATATCCTATGTACAAGGCTTTTATTGAACCTGATCTGCAGACAGCACATATAAAAATCATCAACAAGTTCAATCCGTTTATTGGATTCCAGAGCCCTACTTACATATTAAAGTCAGCCAGAAATGTAACAGTGGATCAAATTAAAGCTGTTCTCTCTGAAGATTTTGAGGAAACAACTGAGCAGACTTATGACATATATCTTCTACCACCTGGTGAAGATCCGGAAAGCTGTCAATCATATTTACGGATGCGGAATAAGGATGGGAAATACAATCTCATGTTTGAGGAATGGGTGACAAACAATCCATTTATCATATCACCAAGAATTACTTTCGCAGTTAGTGTTCGTCTCCTTGGTGGACTAATGGCCCTAGGATACACAATAGCAACTATCCTTAAAAGAAGCAGCCGTGTATTATCGGATGATAGGGTTTGTGTGAAACTAGATTGGCTTGAGCAACTTAATCGACATTATGTTCAGGTACAAGGAAGAGATCGCTTAGTTGTGATATACATAGCACAACAGATGGGTCTTGAAGGTTCTTACATTCCCCGTACCTACATTCAACAGATTCAACTTGAAAAGCTTGTAAATGGTGTTGTGGCCATGCCAGATGATTTAAGGACAAAGCTTAGACTTGATGAGGATTTGATGTCAAGCCCCAAAGAAGCACTCTTTAAAGCCTCTACTAACGCGCTTCACGTAAGACATAGGCGTATAAGGAGTGATATGTCACAGTCATGTACAAATCAAAGGGATAAAAATCAAGCCAAAGTAACTGGATATGTTTCCAACAATCGAGTGCTTCATGAAAGAGATAATTCAGATTCAGTCACAAATCTGGCAAATCAGCTTCATTTTCATAATCATTGGGCACTTGGCAGGGGGCCATTACAATACTTTCAGAACAAATTTCTTCCTTAA 1566 0.3978 MAQDNSGADCCLGLIRDQVRLVKRKHSDRYEVAPIHDQLSFEKGYFVVFHACQLLVQKNDGIILVGVAGPSGAGKTAFTEKILNILPGIAVISMDNYNDSSQIVDGNFDDPRVTDYETLLRNIRDLKEGKPVQVPIYDFKSSSRTGYRTVDVPSSRIVIIEGIYALSEKLRLLLDLRVSVTGGVHLDLVKRVIRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFIGFQSPTYILKSARNVTVDQIKAVLSEDFEETTEQTYDIYLLPPGEDPESCQSYLRMRNKDGKYNLMFEEWVTNNPFIISPRITFAVSVRLLGGLMALGYTIATILKRSSRVLSDDRVCVKLDWLEQLNRHYVQVQGRDRLVVIYIAQQMGLEGSYIPRTYIQQIQLEKLVNGVVAMPDDLRTKLRLDEDLMSSPKEALFKASTNALHVRHRRIRSDMSQSCTNQRDKNQAKVTGYVSNNRVLHERDNSDSVTNLANQLHFHNHWALGRGPLQYFQNKFLP* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2913 521 Gene3D - 63 247 IPR027417 -
Lja4g2913 521 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 233 IPR027417 -
Lja4g2913 521 SUPERFAMILY CYTH-like phosphatases 258 404 IPR033469 -
Lja4g2913 521 Pfam Phosphoribulokinase / Uridine kinase family 65 233 IPR006083 GO:0005524|GO:0016301
Lja4g2913 521 ProSiteProfiles CYTH domain profile. 245 407 IPR023577 -
Lja4g2913 521 CDD UMPK_like 64 236 - -
Lja4g2913 521 Pfam CYTH domain 266 401 IPR023577 -
Lja4g2913 521 PANTHER URIDINE KINASE 11 497 - -
Lja4g2913 521 PANTHER PHOSPHORIBULOKINASE/URIDINE KINASE-LIKE PROTEIN 11 497 - -
Lja4g2913 521 PRINTS Uridine kinase signature 185 195 - -
Lja4g2913 521 PRINTS Uridine kinase signature 221 234 - -
Lja4g2913 521 PRINTS Uridine kinase signature 62 79 - -
Lja4g2913 521 PRINTS Uridine kinase signature 129 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2913 Lja-Chr4 52762737 52771926 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2913 63 233 PRT Gene Family AT5G40870 28.333 4.80e-18 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2913 K00876 - gmx:100797542 800.045