Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2897 ATGAAAGTGAAGATCTTGCGTATCCTTCTCAAAATCCTACTCTTCATTTCCTCTTTCATTTTTCGCAGATTACATGTTTGTAACTTTGCTTCACAGGGTTGTACATGGCATGCTGTTGCTTCGTGGACTTGGGATGCGCAGGATGAAACATGTGGGATTTGTAGGATGGCCTTTGATGGATGTTGTCCTGACTGCAAACTTCCTGGGGATGACTGCCCGATAATTTGGGGTGAATGCAATCACGCATTTCATTTGCACTGTATCCTGAAATGGGTGAATTCTCAGACATCACAAGCGCATTGCCCCATGTGCCGTCGGGAATGGAAGTTTAAAGGATGA 339 0.4454 MKVKILRILLKILLFISSFIFRRLHVCNFASQGCTWHAVASWTWDAQDETCGICRMAFDGCCPDCKLPGDDCPIIWGECNHAFHLHCILKWVNSQTSQAHCPMCRREWKFKG* 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2897 112 PANTHER RING BOX 35 111 - -
Lja4g2897 112 Pfam Anaphase-promoting complex subunit 11 RING-H2 finger 35 111 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
Lja4g2897 112 ProSiteProfiles Zinc finger RING-type profile. 62 105 IPR001841 -
Lja4g2897 112 SUPERFAMILY RING/U-box 35 111 - -
Lja4g2897 112 CDD RING-H2_APC11 48 110 IPR024991 GO:0005680|GO:0008270|GO:0031145|GO:0061630|GO:0097602
Lja4g2897 112 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 34 - -
Lja4g2897 112 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 35 111 - -
Lja4g2897 112 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 112 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2897 Lja-Chr4 51470653 51474045 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2897 62 105 C3H Transcription Factor Family AT1G72220 41.304 9.39e-07 43.9