Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2896 ATGGAAGGTAGTAATTCAGTATTTTGGGTACTGGGTTTTTTTCTAGTGAAGTTGTTAGAGATGTCTCATGCGGCTCTTTCTCCTTCTGGCATAAATTTTGAAGTGGTAGCTCTGATGTCCATTAAGAGGAGCTTGGTTGATCCCTACAATGTCCTGGACAACTGGGATATTAATTCTGTTGATCCTTGTAGCTGGAAGATGATTACTTGTTCTTCAGATGGCTCCGTTTCTATCTTGGGGTCGCCTAGTCAGAATTTGTCTGGTACTCTATCTCCTGGGATTCAAAACCTTACTAACTTGCAATCTGTGTTGCTTCAAAATAATGCCATATCTGGTCCAATTCCTGCTGCAATAGGCAAGCTAGAAAAACTTCAGATGCTCGACTTCTCCAATAACGCATTTAGTGGTGAGATACCTAGTTCTTTGGGAGGCCTTATGAACCTAAATTATTTGCGGTTGAATAATAACAGTCTCACAGGAGCATGCCCTAAGTCTCTTAGCAAAATTGATGGTCTAACCCTCGTAGACCTATCTTATAACAATCTGAGTGGTTCCTTGCCAAGAATATCAGCAAGAACATTCAAAATTGTCGGTAACCCATTAATTTGTGGCCCAAAAGCAAATAACTGTTCTACTGTCTTGCCAGAGCCACTTTCCTTCCCTCCAGACACTCTAAGAGAGCAATCAGACTCCGTTAAAAAAAGCCATCGTGTGGCGATTGCTCTTGGTGCAAGTTTTGGTTCTGCTTTTGTCATTGTGATTATTGTCGGGTTTCTCGTTTGGTGGTGGTATAGAAACAATAAGCAGATATTTTTCGACATTAATGAGCAATATGACCCAGAGGTGCGCCTTGGTCATCTAAAGAGGTACTCTTTCAAAGAACTTCGAGCTGCAACAGACCATTTCAGTTCGAAGAACATTTTAGGAAGGGGTGGCTTTGGAATAGTCTACAAGGGCTGCATGAATGATGGGTCTCTTGTAGCAGTTAAAAGATTGAATGACTACAATGTTGCTGGCGGTGAGATCCAATTTCAAACAGAAGTTGAGACAATAGGTTTAGCTGTGCACCGGAATCTTCTGAGGCTTTGTGGATTTTGTAGCACTCAGAATGAAAGGCTCCTCGTATATCCTTATATGTCTAATGGAAGTGTAGCATCTAGGTTAAAAGATCATGTTAATGGTCAGCCAGCTTTAAATTGGACAAGGCGGAAGAGAATAGCTATAGGTACAGCAAGAGGGTTGGTGTATTTGCACGAGCAGTGTGACCCTAAAATTATTCACCGCGATGTCAAAGCTGCCAATGTATTGCTGGATGAAGACTTTGAAGCAGTTGTTGGTGATTTTGGTTTAGCTAAGCTTCTGGATCAGAGAGATTCCCATGTGACAACGGCAGTGCGTGGCACCATTGGCCACATTGCTCCGGAGTACTTAACTACAGGTCAATCATCAGAAAAGACTGATGTGTTTGGGTTTGGAATCTTGCTGCTTGAGCTGATCACTGGCCACAAGGCTCTAGATTTCGGGCGAGCGGCATCCCAGAAAGGTGTCATGCTTGATTGGGTTAAGAAGCTCCACCAGGATGGAAGATTAAACCAAATGGTGGATAAAGATCTAAAGGTTAACTTTGATTCGATTGAATTAGAAGAGATGGTTCAGGTTGCACTATTGTGTACACAGTTTAATCCTTCTCGTCGTCCCAAGATGTCAGAAGTATTGAAGATGTTGGAAGGAGATGGCTTAGCTGAAAGATGGGAAGCTTCTCAGATGATTGAGACGCCAAGGTTCCAGTCTTGTGAAAACAAGCCTCAAAGATATTCAGATTTTATTGAAGAATCTTCACTCATGGTAGAAGCTATGGAGCTTTCTGGCCCTAGGTGA 1878 0.4233 MEGSNSVFWVLGFFLVKLLEMSHAALSPSGINFEVVALMSIKRSLVDPYNVLDNWDINSVDPCSWKMITCSSDGSVSILGSPSQNLSGTLSPGIQNLTNLQSVLLQNNAISGPIPAAIGKLEKLQMLDFSNNAFSGEIPSSLGGLMNLNYLRLNNNSLTGACPKSLSKIDGLTLVDLSYNNLSGSLPRISARTFKIVGNPLICGPKANNCSTVLPEPLSFPPDTLREQSDSVKKSHRVAIALGASFGSAFVIVIIVGFLVWWWYRNNKQIFFDINEQYDPEVRLGHLKRYSFKELRAATDHFSSKNILGRGGFGIVYKGCMNDGSLVAVKRLNDYNVAGGEIQFQTEVETIGLAVHRNLLRLCGFCSTQNERLLVYPYMSNGSVASRLKDHVNGQPALNWTRRKRIAIGTARGLVYLHEQCDPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLLDQRDSHVTTAVRGTIGHIAPEYLTTGQSSEKTDVFGFGILLLELITGHKALDFGRAASQKGVMLDWVKKLHQDGRLNQMVDKDLKVNFDSIELEEMVQVALLCTQFNPSRRPKMSEVLKMLEGDGLAERWEASQMIETPRFQSCENKPQRYSDFIEESSLMVEAMELSGPR* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2896 625 PANTHER PROTEIN NSP-INTERACTING KINASE 3 6 625 - -
Lja4g2896 625 Gene3D Transferase(Phosphotransferase) domain 1 379 594 - -
Lja4g2896 625 Pfam Leucine rich repeat 98 158 IPR001611 GO:0005515
Lja4g2896 625 Pfam Leucine rich repeat N-terminal domain 34 71 IPR013210 -
Lja4g2896 625 SMART serkin_6 302 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2896 625 Gene3D Ribonuclease Inhibitor 31 212 IPR032675 -
Lja4g2896 625 SUPERFAMILY L domain-like 33 193 - -
Lja4g2896 625 ProSiteProfiles Protein kinase domain profile. 302 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2896 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672|GO:0006468
Lja4g2896 625 SUPERFAMILY Protein kinase-like (PK-like) 279 576 IPR011009 -
Lja4g2896 625 Pfam Protein kinase domain 303 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2896 625 ProSitePatterns Protein kinases ATP-binding region signature. 308 330 IPR017441 GO:0005524
Lja4g2896 625 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 6 625 - -
Lja4g2896 625 Gene3D Phosphorylase Kinase; domain 1 271 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2896 Lja-Chr4 51407297 51417182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2896 67 625 Receptor kinase-like Gene Family AT1G60800 74.296 0.0 818
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Lja4g2896 Pkinase 2.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2896 - - gmx:100806943 1095.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2896 4 51407297 51417182 Lja4g2896 4 51407297 51417182 ECH