Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2894 ATGCCTTCTTCTTCTTCCAAACCCTCTCTGTTCTTCTTCCTTTGTTGCTTTGTAGCTACTGTGCTATGCGACCCACGAGCACAAAAAGCAGCTCTGTTATGCACCAACAAAACAGCATCATCATCAACTCAACAATCCTTCATAGCAAACTTTCTAGCAGCAATGGACGCGTTGACTCCTCTGATCACAAGTCAAAGATACGGTGCAGTTGTGAACGGGTCAACTCAGAGTGATCAAAACGCCACTGTTTACGCTTTCGGTGAGTGCATGAAGGATCTTTCTCAATCTGACTGCAACTTGTGCGTTGCTCAGTGCAAGACCCAGATCCTCCGTTGCTTCCCGTTTCAGCGAGGGATTCGCGGTGGGAGGCTCTTCTATGATGGGTGCTACCTCAGGTACGATGACTATAGTTTCTTCAACGAGAGTCTTGGTGGTCAAGACACGACGGTGTGTGGGGACAGTGATTTTGGTGGGAACAGTAGCTCTGTTTTTGAAGCTAATGCTATGGATTTGGTGAGGAATTTAAGTGTTTTAGCGCCGAAGAATGATGGGTTCTTTGTGGGGTTTGTGGATAGAAGGAATGTTTCTGTTTATGGGTTGGCTCAGTGTTGGGAATTTGTCAATGGCACTGCCTGCAAGCAATGCTTGGCAGATGCGGTTACTAGGATTGCTTCTTGTGCGGGTAAAGAAGAAGGGAGGGCGTTTAATTCTGGTTGTTACTTGAGGTATTCTACCAAGAAGTTCTATGACAATTCAACCAGTGATGCAGCACCTGCAGGAAGTCATGGACACCGGAAAGTTGCCATAATTCTGGCTTCATCTTTTGCTGCGGTGGCTCTTCTGCTGGTTATTGCATCAGTTGTTTTCTTTACAAGGAAGAATCTAATGGCGAGGAGAAGAGAAAGAAGAAGGTTTGGTGCATTTTTGGACACTGTGAACAAGTCCAAGCTAAATGTGCCATATGAAATTCTGGAAAAAGCAACTAATTACTTTAACGATGCAAATAAGCTTGGGCAAGGAGGATCAGGTTCCGTTTATAAAGGAGTTATGCCAGATGGAAATACTGTGGCTATTAAAAGACTTAGCTTTAACACAACACAATGGGCTGATCATTTCTTCAACGAGGTTAATTTGATCCGCGGCATTCATCACAAAAACCTTGTAAAGCTGTTGGGGTGCAGCATTACAGGCCCTGAGAGCCTTCTTGTTTATGAATATGTGCCTAACCAAAGCCTCCTTGATCACTTTTCTGTTAGAAGGATTTCTCAACCACTGACCTGGGAAGTCAGGCACAAGATCATATTAGGAATTGCAGAGGGTTTGGCCTACCTACATGAGGAATGTCATGTGAGAATCATTCATAGAGACATAAAATTAAGCAACATTCTACTTGAGGATGACTTCACAGCCAAGATTGCTGATTTTGGACTTGCTAGATTATTTCCAGAAGACAAGTCTCACATTAGCACAGTCATTGCTGGGACATTGGGTTATATGGCTCCTGAGTATGTAGTTTGTGGGAAGTTGACTGAGAAAGCAGATGTGTACAGTTTTGGAGTTCTAGTTGTTGAAATTGTATCTGGTAAAAGAAACAGCTCCTATGTTCTAAATTCATCCTCTATCCTACAAACGGTTTGGAGACTTTATGGATCAAATAGGCTAACTGACATTGTTGATCCAATCCTACGGGGTATTTTTCCCGCTGAGGAAGCCTGCCGACTACTTCAGATTGGGTTGCTTTGTGCTCAAGCATCAGCTGAGTTGAGACCATCAATATCAGACGTTGTTAAAATGATCAATGGCAGTCATGAAATTCCTCAGCCAACGCAACCGCCATTTATCAATTCTTCTAGTTCAGAACTCAGCAAATCTAGTTTACCTGGATATAACTTTCACCCTGCATCATCTAACACTCAATCTTCAGGAGATGCCACAACTGAAAGTCTGTTAGAGCCTAGATGA 1962 0.4327 MPSSSSKPSLFFFLCCFVATVLCDPRAQKAALLCTNKTASSSTQQSFIANFLAAMDALTPLITSQRYGAVVNGSTQSDQNATVYAFGECMKDLSQSDCNLCVAQCKTQILRCFPFQRGIRGGRLFYDGCYLRYDDYSFFNESLGGQDTTVCGDSDFGGNSSSVFEANAMDLVRNLSVLAPKNDGFFVGFVDRRNVSVYGLAQCWEFVNGTACKQCLADAVTRIASCAGKEEGRAFNSGCYLRYSTKKFYDNSTSDAAPAGSHGHRKVAIILASSFAAVALLLVIASVVFFTRKNLMARRRERRRFGAFLDTVNKSKLNVPYEILEKATNYFNDANKLGQGGSGSVYKGVMPDGNTVAIKRLSFNTTQWADHFFNEVNLIRGIHHKNLVKLLGCSITGPESLLVYEYVPNQSLLDHFSVRRISQPLTWEVRHKIILGIAEGLAYLHEECHVRIIHRDIKLSNILLEDDFTAKIADFGLARLFPEDKSHISTVIAGTLGYMAPEYVVCGKLTEKADVYSFGVLVVEIVSGKRNSSYVLNSSSILQTVWRLYGSNRLTDIVDPILRGIFPAEEACRLLQIGLLCAQASAELRPSISDVVKMINGSHEIPQPTQPPFINSSSSELSKSSLPGYNFHPASSNTQSSGDATTESLLEPR* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2894 653 ProSiteProfiles Gnk2-homologous domain profile. 29 138 IPR002902 -
Lja4g2894 653 SMART serkin_6 331 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2894 653 MobiDBLite consensus disorder prediction 604 647 - -
Lja4g2894 653 ProSiteProfiles Protein kinase domain profile. 331 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2894 653 SUPERFAMILY Protein kinase-like (PK-like) 317 631 IPR011009 -
Lja4g2894 653 Pfam Protein kinase domain 332 541 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2894 653 Gene3D Transferase(Phosphotransferase) domain 1 407 610 - -
Lja4g2894 653 Gene3D Phosphorylase Kinase; domain 1 292 406 - -
Lja4g2894 653 ProSiteProfiles Gnk2-homologous domain profile. 144 248 IPR002902 -
Lja4g2894 653 Gene3D - 28 138 IPR038408 -
Lja4g2894 653 Gene3D - 148 248 IPR038408 -
Lja4g2894 653 CDD STKc_IRAK 337 601 - -
Lja4g2894 653 ProSitePatterns Protein kinases ATP-binding region signature. 337 359 IPR017441 GO:0005524
Lja4g2894 653 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 18 644 - -
Lja4g2894 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 452 464 IPR008271 GO:0004672|GO:0006468
Lja4g2894 653 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 18 644 - -
Lja4g2894 653 MobiDBLite consensus disorder prediction 604 653 - -
Lja4g2894 653 Pfam Salt stress response/antifungal 159 245 IPR002902 -
Lja4g2894 653 Pfam Salt stress response/antifungal 34 136 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2894 Lja-Chr4 51235692 51240596 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2894 24 496 Receptor kinase-like Gene Family AT1G70530 58.562 0.0 593
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja4g2894 Pkinase 2.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2894 - - gmx:100305402 978.008
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2894 4 51235692 51240596 Lja4g2894 4 51235692 51240596 ECH