Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2892 ATGGCTTCTTCTTCTTCCACAATTTTTCTGCTCCTCATTCTCTGTTTCTTCACATCTCCTGTGCTCTGTGAAACACTAGATAACCAGACAACAACCAAGTTATGCACCAACAGAACCGCATCGCCGACGACTCTGCAAACCTTCATAGCAAACTTCCGGGCAGCAATGGACGCGTTAACCCCTCTGATCACAAGTCAAAGATACGGTGCAGTTGTGAACGGTTCAACTCAGAATCAAAACGCCACTGTTTACGCTTTCGGTGAGTGCATGAAGGATCTTTCTCAATCTGATTGCAACGCGTGCTTCTCTCAGTGCAAGATCCAGGTCGTCGGTTGCTTACCGTTTCAGAAAGGTATTCGCGGCGGAAGGCTCTTCTGCGACGGCTGCTACCTCCGTCTTGGTGAGCAAGACACGGCGGTGTGTGGGGCTAGTGATTTTGGCGGGAATGATAGCGCGGTTTTCGAAGCCAATGCTATGGATTTGGTGAGGAATTTGAGTGTTTTGGCGCCGGAGAATGATGGATTCTTTGTGGGGGTTGTGGATAGGAGGAATGTTTCTGTTTATGGTTTGGCTCAGTGTTGGGAATTTGTCAATGGCACTGCCTGCAAGCAATGCTTGGCAGATGCGGTTACTAGGATTGCTTCGTGTGCGGGTAAAGAAGAAGGGAGGGCGTTGAATTCTGGTTGTTTCATGAGGTATTCCACTAAGAAGTTCTATAACAATTCAACCAGTGGTGATGCATCAGCAGGAAATCATGGACACCGGAAAGTTGCTATAATTCTGACTTCATCTTTTGCTGTGGTGGCTCTTCTGCTGGTTATTGTATCAGTTGTTTTCTTCACAAGGAGGAATCTAATGTTGAGGAGAAGAGAAAGAACCCAAATAAGAAAACTTGGTGCACATTTGGACGCTATAAACAAGGCCAAGCTAAATGTGCCATATGAAATTCTTGAGAAAGCAACAGATTACTTTAACGATGCCAATAAGCTAGGGGAAGGAGGATCAGGTTCCGTTTATAAAGGAGTTATGCCCGATGGAAGTACTGTGGCCATAAAAAGACTTAGCTTCAACACAACACAATGGGCTGATCATTTCTTCACTGAGGTTAATTTGATACGCGGCATTGACCACAAAAATCTTGTAAAGCTCTTGGGATGCAGCATTACAGGACCTGAAAGCCTTCTGGTTTATGAATATGTGCCTAACCAGAGCCTCCTTGATCACTTTTCTGGTATAAGGATTTCTCAACCGCTGACTTGGGAAGTCAGGCACAAGATCATATTAGGAATTGCAGAGGGTTTGGCCTACCTTCATGAGGAGTCGTATGTGAGAATCATTCATAGAGACATTAAATTAAGCAACATTCTACTTGAGGATGACTTCACACCCAAGATTGCTGATTTTGGACTTGCTAGATTATTTCCTGAAGACAAGTCTCACATTATCACAGTCATTGCTGGGACACTGGGTTACATGGCTCCAGAGTATGTAGTCTCAGGAAAGTTGACTGAGAAAGCAGATGTGTACAGTTTTGGAGTTCTACTAGTTGAAGTTGTTTCTGGAAAAAGAATCAGTTTCTATGATCTAAACTCATCCTCTATCCTACAAACGGTTTGGAGACTTTATGGATCAAATAGGCTATCTGACATTGTTGATCCAGTCCTAGAGGGAAATTTTCTAGCGGAGGACGCATGCCGACTGCTTCAGATAGGGTTGCTTTGTGCGCAAGCATCAGCTGCATTGAGGCCATCAATGTCAGAAGTTGTTAAAATGATTAGTGAAAATCATGAAATTCCTCAACCAAGGCAACCACCATTTATTAATTCTACTAATTCAGAACTCAGCACGCCTAGTTTACCTGGAAATATTTTTCACCCTGCATCATCCAACACCCAGTCTTCAGGAGATACCACAACAGAAAATCTGCTATAG 1932 0.4379 MASSSSTIFLLLILCFFTSPVLCETLDNQTTTKLCTNRTASPTTLQTFIANFRAAMDALTPLITSQRYGAVVNGSTQNQNATVYAFGECMKDLSQSDCNACFSQCKIQVVGCLPFQKGIRGGRLFCDGCYLRLGEQDTAVCGASDFGGNDSAVFEANAMDLVRNLSVLAPENDGFFVGVVDRRNVSVYGLAQCWEFVNGTACKQCLADAVTRIASCAGKEEGRALNSGCFMRYSTKKFYNNSTSGDASAGNHGHRKVAIILTSSFAVVALLLVIVSVVFFTRRNLMLRRRERTQIRKLGAHLDAINKAKLNVPYEILEKATDYFNDANKLGEGGSGSVYKGVMPDGSTVAIKRLSFNTTQWADHFFTEVNLIRGIDHKNLVKLLGCSITGPESLLVYEYVPNQSLLDHFSGIRISQPLTWEVRHKIILGIAEGLAYLHEESYVRIIHRDIKLSNILLEDDFTPKIADFGLARLFPEDKSHIITVIAGTLGYMAPEYVVSGKLTEKADVYSFGVLLVEVVSGKRISFYDLNSSSILQTVWRLYGSNRLSDIVDPVLEGNFLAEDACRLLQIGLLCAQASAALRPSMSEVVKMISENHEIPQPRQPPFINSTNSELSTPSLPGNIFHPASSNTQSSGDTTTENLL* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2892 643 Gene3D Phosphorylase Kinase; domain 1 285 399 - -
Lja4g2892 643 Gene3D Transferase(Phosphotransferase) domain 1 400 603 - -
Lja4g2892 643 ProSiteProfiles Gnk2-homologous domain profile. 134 238 IPR002902 -
Lja4g2892 643 CDD STKc_IRAK 330 594 - -
Lja4g2892 643 Gene3D - 27 136 IPR038408 -
Lja4g2892 643 Gene3D - 138 238 IPR038408 -
Lja4g2892 643 MobiDBLite consensus disorder prediction 599 643 - -
Lja4g2892 643 Pfam Protein kinase domain 325 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2892 643 ProSiteProfiles Protein kinase domain profile. 324 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2892 643 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 21 637 - -
Lja4g2892 643 SMART serkin_6 324 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2892 643 MobiDBLite consensus disorder prediction 602 643 - -
Lja4g2892 643 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672|GO:0006468
Lja4g2892 643 Pfam Salt stress response/antifungal 149 235 IPR002902 -
Lja4g2892 643 Pfam Salt stress response/antifungal 35 133 IPR002902 -
Lja4g2892 643 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 21 637 - -
Lja4g2892 643 SUPERFAMILY Protein kinase-like (PK-like) 312 624 IPR011009 -
Lja4g2892 643 ProSitePatterns Protein kinases ATP-binding region signature. 330 352 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2892 Lja-Chr4 51204581 51208116 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2892 30 489 Receptor kinase-like Gene Family AT1G70530 57.660 0.0 554
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja4g2892 Pkinase 5.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2892 - - gmx:100305402 877.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2892 4 51204581 51208116 Lja4g2892 4 51204581 51208116 ECH