Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2885 ATGGCTTCTTTCACTCAGCTTTTTTCTTTTCTTTTCCCTCTGTTGGCGACTTCATTACATAGAATTTCAGCCTTTGAAGTTTCCATAAAAACGTCTGTTATAGCTCCTCTTAATTGCTCTGCCAATATCAAAACATGTAATGCCTTCCTCTACCACATAAGCCACAATCACACAGTTGAAGAAATTGCCACCTTTTACTCCGTTAGTTCTTCCCAAATCAATCCTATAATGTATAGAACCAGACAAGATTACCTCATAACAGTACCTTGTTCTTGCAAAATAACCAATGAACTTAGCGGATATTTCTATGATACAACCTACACAGTCAGGCCAAATGACATTTTCTCGAATATTTCAGACCTGATTTACAGTGGCCAAGCCTGGCCAGTTACCGGTACGTTGTTTCCGGAAGAGCATTTATCGATACATATTCCATGTGGGTGTTCAGAAAATGAGTCTCAAATAGTTGTCACCTACACAGTTCAGCAGAATGATACACAAACAACTATTGCTAATCTGTTAAATTCTACACGGGCTGGCATACTGAGCATGAACATAATTCTAGATAAGAACACTGGTTTCATAGACCTTGGTTGGGTGCTGTTTGTTCCCAAGGAATTGAAAGGGCTTCGTGTTCCACCTTCTAACAAAAAAGAAAAGAAACATAAGAACTGGATAATCATCATTGGCATCTTAGCGGGCGTGGTATTACTTTCAATTATTGCAATCATCATTGTCATTCTCAGGAGAAAAGGAGCCAATCAAATCAGCAAAGAAGATTCACAAGTTGTCTCTAAAAGATCAATTCGCAGTAGAAAATTCTCCTCAATGAACAGTAACCTTCATACGCGATACATTTCTGATGCAATGTCAATAGAATCAGAAAGACCAGTAGTGTACAACCTTGATGACATTGAAGAGGCTACAAATTACTTTGATGAAACTCAAAAAATTGGAAGGGGTGGATTTGGGAGTGTGTATTTCGGAATGTTAGGGAAGACGGAGGTTGCTGTGAAGAAGATGAGGTCTAATAAATCTAGAGAGTTCTATGCAGAACTCAAGGTGTTGTGTAGGATCAATCATATCAACATTGTGGAGCTGTTGGGATATGCCAGTGGAGAAGATCACCTCTATTTGGTGTATGAGTATGTATCAAATGGATCTCTTAGTGACCATCTTCATGATCCATTACTAAAAGGTTACCAGCCTCTTTCATGGAGTGCTAGGGTTCAGATTGCACTTGATGCTGCAAAAGGTCTTGAATATATACATGATCATACGAAAGCACGATATGTTCACCGAGATATAAAGACTAGCAATATCCTTCTTGACGAAAAGCTCAGAGCTAAGGTAGGAGATTTTGGACTTGCAAAGCTAGTAGACAGAACCAATGATGAAAGTTTTATAGCAACAAGGCTTGTTGGAACACCAGGCTACCTTCCACCAGAATCTGTGAAGGAGCTTCAGGTGACCCCAAAAACTGATGTCTTTGCATTTGGAGTGGTTTTGTCAGAGCTATTAACAGGAAAACGTGCACTATTCCGAGAGAGCAAAGAAGCCACCAAAATGAACTCACTTATTACTGTTGTTAATAAAGTATTTCAAGATGATGACCCGATGATTGCTTTAGAAGATGTCATAGATAATAATCTCGAAGCCAGCTATCCAATGGAAGATGTCTACAAGATAGCAGAAATAGCAGAGTGGTGCTTACAAGAAGATCCAATGGAAAGGCCTGAAATGAGAGATGTCGTTAGGGCATTGACCCAAATTGTGATGTCCTCGATAGAGTGGGAAGCATCACTAGGCGGAAACAGTGAAGTCTTTAGCGGTTTGTATAGTGGAAGATGA 1851 0.3955 MASFTQLFSFLFPLLATSLHRISAFEVSIKTSVIAPLNCSANIKTCNAFLYHISHNHTVEEIATFYSVSSSQINPIMYRTRQDYLITVPCSCKITNELSGYFYDTTYTVRPNDIFSNISDLIYSGQAWPVTGTLFPEEHLSIHIPCGCSENESQIVVTYTVQQNDTQTTIANLLNSTRAGILSMNIILDKNTGFIDLGWVLFVPKELKGLRVPPSNKKEKKHKNWIIIIGILAGVVLLSIIAIIIVILRRKGANQISKEDSQVVSKRSIRSRKFSSMNSNLHTRYISDAMSIESERPVVYNLDDIEEATNYFDETQKIGRGGFGSVYFGMLGKTEVAVKKMRSNKSREFYAELKVLCRINHINIVELLGYASGEDHLYLVYEYVSNGSLSDHLHDPLLKGYQPLSWSARVQIALDAAKGLEYIHDHTKARYVHRDIKTSNILLDEKLRAKVGDFGLAKLVDRTNDESFIATRLVGTPGYLPPESVKELQVTPKTDVFAFGVVLSELLTGKRALFRESKEATKMNSLITVVNKVFQDDDPMIALEDVIDNNLEASYPMEDVYKIAEIAEWCLQEDPMERPEMRDVVRALTQIVMSSIEWEASLGGNSEVFSGLYSGR* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2885 616 SMART serkin_6 312 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2885 616 Gene3D Phosphorylase Kinase; domain 1 290 383 - -
Lja4g2885 616 Gene3D Transferase(Phosphotransferase) domain 1 384 601 - -
Lja4g2885 616 Gene3D LysM domain 149 219 IPR036779 -
Lja4g2885 616 ProSitePatterns Serine/Threonine protein kinases active-site signature. 431 443 IPR008271 GO:0004672|GO:0006468
Lja4g2885 616 SUPERFAMILY Protein kinase-like (PK-like) 295 588 IPR011009 -
Lja4g2885 616 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 18 616 IPR044812 GO:0019199|GO:0045087
Lja4g2885 616 ProSitePatterns Protein kinases ATP-binding region signature. 318 340 IPR017441 GO:0005524
Lja4g2885 616 PANTHER LYSM-DOMAIN PROTEIN KINASE FAMILY PROTEIN-RELATED 18 616 - -
Lja4g2885 616 Pfam Protein kinase domain 313 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2885 616 ProSiteProfiles Protein kinase domain profile. 312 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2885 Lja-Chr4 50964953 50971123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2885 36 616 Receptor kinase-like Gene Family AT1G51940 37.733 2.14e-121 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Lja4g2885 Pkinase 2.8e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2885 - - gmx:100791718 883.634