Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2868 ATGGAAGAAGCACTGCGCCGTCTCAACGGCATGCCCTCTATCCAAGACACCGACGACCACGACTCCGACCACCACCGTCACAAGAAGTGCGCCACCAAGAGGATCCTGAGAGATACTGGCACCTCCGCCGGCACCACCATAAGGTACCGTGGAGTCCGCCGCAGGCCGTGGGGCCGTTACGCTGCCGAGATAAGGGACCCGCACTCCAAGGAGCGCCGCTGGCTGGGCACCTTCGACACGGCGGAGCAAGCCGCCTGCGCCTACGACTGCGCTGCCATAGCCATGCGCGGAGCTAAAGCCCGAACCAACTTCGCCTACCCCGACGCCGCCACCACCACCACCGAGCCACACCTCTATCACCCCTTCAGCATCCCGAACCCAAAGCAAACTCCGCAGCACCGCCACGTTAACAAGCTCAACCGCCACCTGAGCGGCGGTGATAGCGTACCTGCATCCGCATCACCAACCATGCAGCCGCAGCAGCACCACAACGCTCCCCTTAACATGGTTCTATTTCGTGACTACCTTAACTCTTCCAGCTCCTCGAACCCGTTTATGGTTCCTTCTTCTACAACTCAACAGCAGTTTATTCACAACAACAACACTTGTTCAATCCCTTCTACTTGTCTCCATGGTTGCTGCTTTGTGACTTCTTCCCCCGGCGGCAACACTGTTATGAATAACGCTGTTGGCGCCAGTAGGGAAGAAGTCACCGATGAAGGTGTTGAAGAAGATTCTGAGTTCTTCCCGATAGAAGCTTCGGACTCTGGGTTGTTGGAAGAGATAGTTCATAAGTTCATGAGAAAGCCAAAACCAAAACCCGAGACTAATTTGTCCGTCCCGGAAGATTCACTTCCTCAACAAACATCTTATGATCATACAAGGACGAGGCTTCCAGTGGCCGAGAGTTTTGGTTTTGGTCCCCACGGTCTGAATGGGTTCAACTTGAACAGTAACACCGCGCATCAGGCTGGTGCTGCGTCTAAGGGGAGTGACCCGTTTCACATGATGAATCACGCAGATCGCGCTATCATGGAGGATATTCTTCGCCATCCAGAACTTTTTAATTCACTTGCAGCCAGGATGCAAAATGCTTAG 1098 0.5428 MEEALRRLNGMPSIQDTDDHDSDHHRHKKCATKRILRDTGTSAGTTIRYRGVRRRPWGRYAAEIRDPHSKERRWLGTFDTAEQAACAYDCAAIAMRGAKARTNFAYPDAATTTTEPHLYHPFSIPNPKQTPQHRHVNKLNRHLSGGDSVPASASPTMQPQQHHNAPLNMVLFRDYLNSSSSSNPFMVPSSTTQQQFIHNNNTCSIPSTCLHGCCFVTSSPGGNTVMNNAVGASREEVTDEGVEEDSEFFPIEASDSGLLEEIVHKFMRKPKPKPETNLSVPEDSLPQQTSYDHTRTRLPVAESFGFGPHGLNGFNLNSNTAHQAGAASKGSDPFHMMNHADRAIMEDILRHPELFNSLAARMQNA* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2868 365 MobiDBLite consensus disorder prediction 1 30 - -
Lja4g2868 365 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE 1 365 - -
Lja4g2868 365 CDD AP2 48 106 IPR001471 GO:0003700|GO:0006355
Lja4g2868 365 MobiDBLite consensus disorder prediction 269 291 - -
Lja4g2868 365 ProSiteProfiles AP2/ERF domain profile. 48 105 IPR001471 GO:0003700|GO:0006355
Lja4g2868 365 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 365 - -
Lja4g2868 365 Gene3D AP2/ERF domain 47 106 IPR036955 GO:0003700|GO:0006355
Lja4g2868 365 Pfam AP2 domain 48 97 IPR001471 GO:0003700|GO:0006355
Lja4g2868 365 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Lja4g2868 365 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Lja4g2868 365 SUPERFAMILY DNA-binding domain 48 105 IPR016177 GO:0003677
Lja4g2868 365 SMART rav1_2 48 111 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2868 Lja-Chr4 50440340 50441437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2868 26 269 AP2-EREBP Transcription Factor Family AT1G12980 40.574 3.46e-40 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lja4g2868 AP2 1.5e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2868 - - aprc:113860142 293.893