Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lja4g2868 | ATGGAAGAAGCACTGCGCCGTCTCAACGGCATGCCCTCTATCCAAGACACCGACGACCACGACTCCGACCACCACCGTCACAAGAAGTGCGCCACCAAGAGGATCCTGAGAGATACTGGCACCTCCGCCGGCACCACCATAAGGTACCGTGGAGTCCGCCGCAGGCCGTGGGGCCGTTACGCTGCCGAGATAAGGGACCCGCACTCCAAGGAGCGCCGCTGGCTGGGCACCTTCGACACGGCGGAGCAAGCCGCCTGCGCCTACGACTGCGCTGCCATAGCCATGCGCGGAGCTAAAGCCCGAACCAACTTCGCCTACCCCGACGCCGCCACCACCACCACCGAGCCACACCTCTATCACCCCTTCAGCATCCCGAACCCAAAGCAAACTCCGCAGCACCGCCACGTTAACAAGCTCAACCGCCACCTGAGCGGCGGTGATAGCGTACCTGCATCCGCATCACCAACCATGCAGCCGCAGCAGCACCACAACGCTCCCCTTAACATGGTTCTATTTCGTGACTACCTTAACTCTTCCAGCTCCTCGAACCCGTTTATGGTTCCTTCTTCTACAACTCAACAGCAGTTTATTCACAACAACAACACTTGTTCAATCCCTTCTACTTGTCTCCATGGTTGCTGCTTTGTGACTTCTTCCCCCGGCGGCAACACTGTTATGAATAACGCTGTTGGCGCCAGTAGGGAAGAAGTCACCGATGAAGGTGTTGAAGAAGATTCTGAGTTCTTCCCGATAGAAGCTTCGGACTCTGGGTTGTTGGAAGAGATAGTTCATAAGTTCATGAGAAAGCCAAAACCAAAACCCGAGACTAATTTGTCCGTCCCGGAAGATTCACTTCCTCAACAAACATCTTATGATCATACAAGGACGAGGCTTCCAGTGGCCGAGAGTTTTGGTTTTGGTCCCCACGGTCTGAATGGGTTCAACTTGAACAGTAACACCGCGCATCAGGCTGGTGCTGCGTCTAAGGGGAGTGACCCGTTTCACATGATGAATCACGCAGATCGCGCTATCATGGAGGATATTCTTCGCCATCCAGAACTTTTTAATTCACTTGCAGCCAGGATGCAAAATGCTTAG | 1098 | 0.5428 | MEEALRRLNGMPSIQDTDDHDSDHHRHKKCATKRILRDTGTSAGTTIRYRGVRRRPWGRYAAEIRDPHSKERRWLGTFDTAEQAACAYDCAAIAMRGAKARTNFAYPDAATTTTEPHLYHPFSIPNPKQTPQHRHVNKLNRHLSGGDSVPASASPTMQPQQHHNAPLNMVLFRDYLNSSSSSNPFMVPSSTTQQQFIHNNNTCSIPSTCLHGCCFVTSSPGGNTVMNNAVGASREEVTDEGVEEDSEFFPIEASDSGLLEEIVHKFMRKPKPKPETNLSVPEDSLPQQTSYDHTRTRLPVAESFGFGPHGLNGFNLNSNTAHQAGAASKGSDPFHMMNHADRAIMEDILRHPELFNSLAARMQNA* | 366 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lja4g2868 | 365 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Lja4g2868 | 365 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE | 1 | 365 | - | - | |
Lja4g2868 | 365 | CDD | AP2 | 48 | 106 | IPR001471 | GO:0003700|GO:0006355 | |
Lja4g2868 | 365 | MobiDBLite | consensus disorder prediction | 269 | 291 | - | - | |
Lja4g2868 | 365 | ProSiteProfiles | AP2/ERF domain profile. | 48 | 105 | IPR001471 | GO:0003700|GO:0006355 | |
Lja4g2868 | 365 | PANTHER | AP2 DOMAIN CLASS TRANSCRIPTION FACTOR | 1 | 365 | - | - | |
Lja4g2868 | 365 | Gene3D | AP2/ERF domain | 47 | 106 | IPR036955 | GO:0003700|GO:0006355 | |
Lja4g2868 | 365 | Pfam | AP2 domain | 48 | 97 | IPR001471 | GO:0003700|GO:0006355 | |
Lja4g2868 | 365 | PRINTS | Ethylene responsive element binding protein signature | 71 | 87 | IPR001471 | GO:0003700|GO:0006355 | |
Lja4g2868 | 365 | PRINTS | Ethylene responsive element binding protein signature | 49 | 60 | IPR001471 | GO:0003700|GO:0006355 | |
Lja4g2868 | 365 | SUPERFAMILY | DNA-binding domain | 48 | 105 | IPR016177 | GO:0003677 | |
Lja4g2868 | 365 | SMART | rav1_2 | 48 | 111 | IPR001471 | GO:0003700|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lja4g2868 | Lja-Chr4 | 50440340 | 50441437 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lja4g2868 | 26 | 269 | AP2-EREBP Transcription Factor Family | AT1G12980 | 40.574 | 3.46e-40 | 143 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-ERF | Lja4g2868 | AP2 | 1.5e-11 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lja4g2868 | - | - | aprc:113860142 | 293.893 |