LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja4g2868	ATGGAAGAAGCACTGCGCCGTCTCAACGGCATGCCCTCTATCCAAGACACCGACGACCACGACTCCGACCACCACCGTCACAAGAAGTGCGCCACCAAGAGGATCCTGAGAGATACTGGCACCTCCGCCGGCACCACCATAAGGTACCGTGGAGTCCGCCGCAGGCCGTGGGGCCGTTACGCTGCCGAGATAAGGGACCCGCACTCCAAGGAGCGCCGCTGGCTGGGCACCTTCGACACGGCGGAGCAAGCCGCCTGCGCCTACGACTGCGCTGCCATAGCCATGCGCGGAGCTAAAGCCCGAACCAACTTCGCCTACCCCGACGCCGCCACCACCACCACCGAGCCACACCTCTATCACCCCTTCAGCATCCCGAACCCAAAGCAAACTCCGCAGCACCGCCACGTTAACAAGCTCAACCGCCACCTGAGCGGCGGTGATAGCGTACCTGCATCCGCATCACCAACCATGCAGCCGCAGCAGCACCACAACGCTCCCCTTAACATGGTTCTATTTCGTGACTACCTTAACTCTTCCAGCTCCTCGAACCCGTTTATGGTTCCTTCTTCTACAACTCAACAGCAGTTTATTCACAACAACAACACTTGTTCAATCCCTTCTACTTGTCTCCATGGTTGCTGCTTTGTGACTTCTTCCCCCGGCGGCAACACTGTTATGAATAACGCTGTTGGCGCCAGTAGGGAAGAAGTCACCGATGAAGGTGTTGAAGAAGATTCTGAGTTCTTCCCGATAGAAGCTTCGGACTCTGGGTTGTTGGAAGAGATAGTTCATAAGTTCATGAGAAAGCCAAAACCAAAACCCGAGACTAATTTGTCCGTCCCGGAAGATTCACTTCCTCAACAAACATCTTATGATCATACAAGGACGAGGCTTCCAGTGGCCGAGAGTTTTGGTTTTGGTCCCCACGGTCTGAATGGGTTCAACTTGAACAGTAACACCGCGCATCAGGCTGGTGCTGCGTCTAAGGGGAGTGACCCGTTTCACATGATGAATCACGCAGATCGCGCTATCATGGAGGATATTCTTCGCCATCCAGAACTTTTTAATTCACTTGCAGCCAGGATGCAAAATGCTTAG	1098	0.5428	MEEALRRLNGMPSIQDTDDHDSDHHRHKKCATKRILRDTGTSAGTTIRYRGVRRRPWGRYAAEIRDPHSKERRWLGTFDTAEQAACAYDCAAIAMRGAKARTNFAYPDAATTTTEPHLYHPFSIPNPKQTPQHRHVNKLNRHLSGGDSVPASASPTMQPQQHHNAPLNMVLFRDYLNSSSSSNPFMVPSSTTQQQFIHNNNTCSIPSTCLHGCCFVTSSPGGNTVMNNAVGASREEVTDEGVEEDSEFFPIEASDSGLLEEIVHKFMRKPKPKPETNLSVPEDSLPQQTSYDHTRTRLPVAESFGFGPHGLNGFNLNSNTAHQAGAASKGSDPFHMMNHADRAIMEDILRHPELFNSLAARMQNA*	366

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lja4g2868	365	MobiDBLite	consensus disorder prediction	1	30	-	-
Lja4g2868	365	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE	1	365	-	-
Lja4g2868	365	CDD	AP2	48	106	IPR001471	GO:0003700\|GO:0006355
Lja4g2868	365	MobiDBLite	consensus disorder prediction	269	291	-	-
Lja4g2868	365	ProSiteProfiles	AP2/ERF domain profile.	48	105	IPR001471	GO:0003700\|GO:0006355
Lja4g2868	365	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	1	365	-	-
Lja4g2868	365	Gene3D	AP2/ERF domain	47	106	IPR036955	GO:0003700\|GO:0006355
Lja4g2868	365	Pfam	AP2 domain	48	97	IPR001471	GO:0003700\|GO:0006355
Lja4g2868	365	PRINTS	Ethylene responsive element binding protein signature	71	87	IPR001471	GO:0003700\|GO:0006355
Lja4g2868	365	PRINTS	Ethylene responsive element binding protein signature	49	60	IPR001471	GO:0003700\|GO:0006355

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja4g2868	Lja-Chr4	50440340	50441437	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja4g2868	26	269	AP2-EREBP Transcription Factor Family	AT1G12980	40.574	3.46e-40	143

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Lja4g2868		AP2	1.5e-11	CL0081

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja4g2868	-		-	aprc:113860142	293.893

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