Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2863 ATGGACTACGATGAGCAAGAGGAAGAGCTGGTCATGGCTGGAGGAGGAGGAGCGAGTTACGACGACGACGACTCCTCGCTGGCGAACCCGACCCGAGTCAAAATGCCGAGCCCCGTCGACGACCCAGCGGCGATGATGGTGGTGGTCAGAAACACCGGCAAGGGAAAGTACCGAGAGTGCCTCAAGAACCACGCCGTCGGCATGGGAGGCTACGCGCTCGACGGCTGCCTGGAGTTCATGGCCGCCGGACCCGAAGGCACCATCGACGCCCTGAAATGCGCCGCCTGCGACTGCCACCGCAACTTCCACCGCAAGGACGCTGCCGCCTTCCCCGGTGACCACCCGTACCATCCTTTCCACCACCGCCGCCACCAACCCCCACCAGGGCAGCCCCAGTACGCGGCTTGCTACCGGGCTACCCCGGCTGGGTACCTCCACGTGGCGGGGCCCAACAGAGGCTCGGGTGCCGCCACGCTGGCGTTGCCAATTGGAGGTGGGCCCCAGGGCGCTCGGGAGCTGATGGATCATGATGATGTTTCGGACCGAAGCGGAGGCGGAGGAGAAGGGTCGAACTCGAGGGCAGGGAAGAGGTTCAGGACCAAGTTCACTCATGAACAGAAGGAGAAGATGCTGGAGTTTGCTGAGAGTGCTGGCTGGAGGATTCAGAGGCATGATGACAATGTGGTGGAAGAGTTTTGTAACGAGATTGGTGTCAAGCGCCATGTTCTTAAGGTTTGGATGCATAACAACAAGCACACCCTTGGTAAGAAGCCCTAG 777 0.6126 MDYDEQEEELVMAGGGGASYDDDDSSLANPTRVKMPSPVDDPAAMMVVVRNTGKGKYRECLKNHAVGMGGYALDGCLEFMAAGPEGTIDALKCAACDCHRNFHRKDAAAFPGDHPYHPFHHRRHQPPPGQPQYAACYRATPAGYLHVAGPNRGSGAATLALPIGGGPQGARELMDHDDVSDRSGGGGEGSNSRAGKRFRTKFTHEQKEKMLEFAESAGWRIQRHDDNVVEEFCNEIGVKRHVLKVWMHNNKHTLGKKP* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2863 258 Pfam ZF-HD protein dimerisation region 56 106 IPR006456 -
Lja4g2863 258 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 57 106 IPR006456 -
Lja4g2863 258 SUPERFAMILY Homeodomain-like 183 256 IPR009057 -
Lja4g2863 258 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 44 257 - -
Lja4g2863 258 Gene3D - 180 255 - -
Lja4g2863 258 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 196 251 IPR006455 -
Lja4g2863 258 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 56 106 IPR006456 -
Lja4g2863 258 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 44 257 - -
Lja4g2863 258 MobiDBLite consensus disorder prediction 1 39 - -
Lja4g2863 258 MobiDBLite consensus disorder prediction 158 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2863 Lja-Chr4 49973743 49974519 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2863 53 254 ZF-HD Transcription Factor Family AT4G24660 50.000 2.14e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lja4g2863 ZF-HD_dimer 1.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2863 - - lja:Lj0g3v0229739.1 489.96