Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2843 ATGGAAAACCCCAGCGTCGAGCACCGTAACCCTTCTACGCCCAAATTCTACGACGGCGACGACGTCGTCTCCGACTTAGTCTGCGTGAGGATTACCCAGGACGATACCGTCAAGGCCGTTAACACCTTGTCCTCCGCCGCCGCCCACCGATCAAACCCGCTACAGTTCTCCGTTCGTATGATCTCTGGTGGAAGCACCATGGTTATGCAAGCGTATCCCGAAGAAACAGTCCAATCGATTCTCGAGCGTATCGAGACCTTGAAGCGAATCCCTATTTCTGAACAGAGGTTGATTTTCATGGGGAAGCTGCTTCAGAGGGAGAAGACTCTCGCCGAATGTTCCATCCAAAACGGCGTCAATCTTCAACTCGTTTGTCGCATGCGCCCCACCGGACACCCTCAGGCATGGCAGGTCATAAACGACATGGTCTCCGTCGTTCTCAAACTCTACCACGGCGGAGTTGTTCCCGGCGCTGTGAAAACCATCAAGGGCTTCATCACGACCTACCTCAACATGGCGCCAAGGATTGACGACAAGGATTCTGCTTCCGGGTATTTTCAGATTTTCCGGTCTTGCTCCGCCGTGCTTGTCTCGCTGTATCTGTCCCCGTTCACGGGTAATAAGGATTGTGCTGATTCTTCTGTTAGGCATTTTTTAACCTCTTGTAGGAACACCCTTTCTGTGTCCCTGCACGCGCAGTGTGCGCGTGTGGTCTTGGAGTTTTGTACATTGCTTAGGGTTAGGGGTAGGGTGATAGGTTCTGAGGATCCTTTGTATCTCTTCTGCAGGAGTACTCTTGGGTCATTGTTGGAAACTGCTAGGGTTTCGTGTGCTGCTTCTGAGATTGACAATGCTAAAGAGGAGATCATTTTTGTTCAAGATATATTGCCTTTTGTTAGGGAGCTTGCTAAGAGGTTGTTGGTGGATTTGGATTTGAGTATGATATCCCCCTCCACTGTGGGGACTTTGTTTAACAATGTTGGGGATTTTACTGCGTTCTTGATCCCTTTGAGGAAAGGAATTATGGAGCAACAAGCTCTCAAGGATGTGTTGCTCGTGGGAGAGGTTGAAGAAGACCTTCTTGGCTTGTACAATGATTTATTGAGCAAAATTGATCAGTGCCTTCAATACTTGGGGCAGAGATGGGCTGGCCATGAAATGATGCAAAGGGATGATCATGATCTTGATTGGTCTCATTATCTTTCCATTTTGAAGGAATTGTATCTGATTTCTAAGCTTTATGATGGTGCTGAAGAAAAGCTCTGGAATGTTTTGATGTGTCATAGAAGCGTGCTGTGTTTGCTGATTGTTCGATATGCAAAGAGGACTGGTGAGCATCAGTGGATTCTCGAGCACAAGCCTGTGACGGATTTTGAGTCTAGGAGGCATTTGGCAATGCTGATGTTCCCAGAGGTAATCGAAGACTACGAGGAAATGTACGAGATGCTTATTGACAGGTCTCAGTTATTGAGTGAATCTTTTGAGTACATAGCACGAGCTGATCCTGAATCGCTGAAAGCTGGCCTATTCATAAAATTCAAAAATGAGGAAGTCACTGGCCCAAGTGTAGTAAGGGAATGGTTTCTTTTGGTATGTCAAGCGATATTCAACCCGCAAAATGCACTTTTTCTGGCATGCCCCCATAATCCAAGGAGATTTTACCCCAACCCTGCTTCTAAGGTAAATCCTCAGCACCTTGAGTACTTCAGCTTCTGTGGTCGAGTTATTGCATTAGCTTTGATGCATAGGGTACAAGTGGGTATTGTTTTGGATCGTGTGTTTTTCTTGCAATTGGCTGGGAAGTATGTTACTTTAGAAGACATAAAGGATGCAGATCCAAACTTATATACTAGATGCAAGCAAATATTAGACATGGATTCTGATTTCATTGATTCAGATGCATTAGGACTGACTTTTGTTAGAGAGGCGGAGGAATTAGGACACACAAAAGTGGTTGAGCTCTCCTTGTAG 1971 0.4607 MENPSVEHRNPSTPKFYDGDDVVSDLVCVRITQDDTVKAVNTLSSAAAHRSNPLQFSVRMISGGSTMVMQAYPEETVQSILERIETLKRIPISEQRLIFMGKLLQREKTLAECSIQNGVNLQLVCRMRPTGHPQAWQVINDMVSVVLKLYHGGVVPGAVKTIKGFITTYLNMAPRIDDKDSASGYFQIFRSCSAVLVSLYLSPFTGNKDCADSSVRHFLTSCRNTLSVSLHAQCARVVLEFCTLLRVRGRVIGSEDPLYLFCRSTLGSLLETARVSCAASEIDNAKEEIIFVQDILPFVRELAKRLLVDLDLSMISPSTVGTLFNNVGDFTAFLIPLRKGIMEQQALKDVLLVGEVEEDLLGLYNDLLSKIDQCLQYLGQRWAGHEMMQRDDHDLDWSHYLSILKELYLISKLYDGAEEKLWNVLMCHRSVLCLLIVRYAKRTGEHQWILEHKPVTDFESRRHLAMLMFPEVIEDYEEMYEMLIDRSQLLSESFEYIARADPESLKAGLFIKFKNEEVTGPSVVREWFLLVCQAIFNPQNALFLACPHNPRRFYPNPASKVNPQHLEYFSFCGRVIALALMHRVQVGIVLDRVFFLQLAGKYVTLEDIKDADPNLYTRCKQILDMDSDFIDSDALGLTFVREAEELGHTKVVELSL* 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2843 656 Gene3D - 46 142 - -
Lja4g2843 656 SUPERFAMILY Ubiquitin-like 55 142 IPR029071 -
Lja4g2843 656 SMART ubq_7 54 126 IPR000626 GO:0005515
Lja4g2843 656 ProSiteProfiles HECT domain profile. 501 656 IPR000569 GO:0004842
Lja4g2843 656 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL5 40 654 - -
Lja4g2843 656 Pfam Ubiquitin family 58 128 IPR000626 GO:0005515
Lja4g2843 656 SUPERFAMILY Hect, E3 ligase catalytic domain 475 654 IPR035983 GO:0004842
Lja4g2843 656 Gene3D Hect, E3 ligase catalytic domains 483 600 - -
Lja4g2843 656 PRINTS Ubiquitin signature 107 128 IPR019956 -
Lja4g2843 656 PRINTS Ubiquitin signature 65 85 IPR019956 -
Lja4g2843 656 PRINTS Ubiquitin signature 86 106 IPR019956 -
Lja4g2843 656 ProSiteProfiles Ubiquitin domain profile. 54 130 IPR000626 GO:0005515
Lja4g2843 656 Pfam HECT-domain (ubiquitin-transferase) 530 654 IPR000569 GO:0004842
Lja4g2843 656 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 40 654 - -
Lja4g2843 656 Gene3D Hect, E3 ligase catalytic domain 601 654 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2843 Lja-Chr4 48478344 48480774 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2843 54 128 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 34.667 3.54e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2843 - - gmx:100796470 871.692