Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2838 ATGACTGTGGATGAAGTAGGTAGTAGTAGCTCTGAGTGGAGCAGAGAGCAGGATAAAGCATTTGAAAATGCCTTGGCAACTTATCCTGAGGATGATTCAGATCGATGGGAGAAGATTGCGGCTGATGTACCGGGGAAAACTTTAGAAGAGATTAAACATCATTATGAGCTTTTGGTTGATGATGTTAACCAGATTGATTCTGGTTGTGTACCTGTGCCATCTTATAATTCCTTTTCCGAGGGCTCAAGAAGCCATGCTAGTGATGAAGGAGCTGGAAAGAAGGGGGGCCATCCTTGGAACTACAACAGTGAGTCTAACCATGGAACTAAGGCTTCGAGATCTGATCAGGAGCGACGAAAGGGTATTGCTTGGACTGAGGAAGAACACAGATTGTTTCTTCTTGGTTTGGATAAGTATGGAAAAGGTGACTGGCGAAGTATATCAAGGAACTTTGTGGTGACAAGAACACCAACACAAGTAGCAAGCCATGCCCAAAAGTACTTCATTCGTTTGAATTCGATGAATAAAGATAGAAGGCGATCCAGTATACATGATATCACCAGTGTGAACAATGGAGACATTTCAGCTCCTCAAGGACCAATAACTGGTCAGGCAAATGATTCTGCAGAAAATTCATCTGGAAAATCATCCAAACAAACCCCTCCAACCCCAACTGGGGCCCCAGGTGTTGGAATATATGGTGTTCCTACCATTGGACAACCTGTCGGAGGACCCCTTGTATCTGCAGTCGGCACCCCAGTTAATCTTGCTGGCCCGGCACACATGGCATATGGTCTTAGAGCCCCGGTTCCTGGGGCTGTGGTTCCTGGGGCACCAATGAACTTGGGTCATGTTCCATACCCAATGCCTCATACATCTGCTCATAGGTGA 891 0.4602 MTVDEVGSSSSEWSREQDKAFENALATYPEDDSDRWEKIAADVPGKTLEEIKHHYELLVDDVNQIDSGCVPVPSYNSFSEGSRSHASDEGAGKKGGHPWNYNSESNHGTKASRSDQERRKGIAWTEEEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVNNGDISAPQGPITGQANDSAENSSGKSSKQTPPTPTGAPGVGIYGVPTIGQPVGGPLVSAVGTPVNLAGPAHMAYGLRAPVPGAVVPGAPMNLGHVPYPMPHTSAHR* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2838 296 ProSiteProfiles Myb-like domain profile. 5 59 IPR001005 -
Lja4g2838 296 Gene3D - 122 174 - -
Lja4g2838 296 ProSiteProfiles SANT domain profile. 124 172 IPR017884 -
Lja4g2838 296 Gene3D - 6 72 - -
Lja4g2838 296 MobiDBLite consensus disorder prediction 178 230 - -
Lja4g2838 296 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 120 170 IPR006447 GO:0003677
Lja4g2838 296 CDD SANT 123 168 IPR001005 -
Lja4g2838 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 115 172 IPR017930 -
Lja4g2838 296 PANTHER HOMEODOMAIN-LIKE TRANSCRIPTIONAL REGULATOR-RELATED 8 284 - -
Lja4g2838 296 SUPERFAMILY Homeodomain-like 11 67 IPR009057 -
Lja4g2838 296 SUPERFAMILY Homeodomain-like 118 173 IPR009057 -
Lja4g2838 296 Pfam Myb-like DNA-binding domain 123 168 IPR001005 -
Lja4g2838 296 Pfam Myb-like DNA-binding domain 11 55 IPR001005 -
Lja4g2838 296 ProSiteProfiles SANT domain profile. 8 63 IPR017884 -
Lja4g2838 296 ProSiteProfiles Myb-like domain profile. 116 168 IPR001005 -
Lja4g2838 296 PANTHER TRANSCRIPTION FACTOR KUA1 8 284 - -
Lja4g2838 296 SMART sant 120 170 IPR001005 -
Lja4g2838 296 SMART sant 9 61 IPR001005 -
Lja4g2838 296 MobiDBLite consensus disorder prediction 185 224 - -
Lja4g2838 296 CDD SANT 12 59 IPR001005 -
Lja4g2838 296 MobiDBLite consensus disorder prediction 77 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2838 Lja-Chr4 48094661 48103692 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja4g2838 Myb_DNA-binding 1.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2838 - - gmx:100820272 506.523