Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lja4g2837 | ATGCAGTTCAAGTATCGTGCCATCGACAACATGTCACAACCATCGCCTCCGTCATCAACCACGCCGTTCCCTCCTTTCTCCGATCAACCACTGGGAGGTGCGGGTGGTTTTACGAGGATGTTTCCTCCGACGATGACTATGAGTGCTAGAGGAGCATTGCAGAGAGAGGTGGAGAAGGAGTTGATAAGGCGGGAGATCATCTCCGGAGAGATGGCGCGCCGGCGGGAGCTGGAGGAGGAGGTGAGAAGGGAGCTGGCATTGGAGAGAAAGTTGGGGATCCCAATGCCAGAGATGTTCTTGAACACAGTTGCACTAGATGTCATGCCACCACCACAACTTTGTACCTTGGACCTTGCGGAAATCAAAGAAGCTAATAACCAAGATCAAATGCAGGCTAATCCAAACCCTGATCGTTGTGATGCAAAGCGCAAAGCAGAGGCACCTGCTGTTAATGACAGAACGTGTTCTCGACTGATGAAAAAACCCAAGAAGGAGTGGAGATGCGCACTATGTGAAGTCAGCGCCACCGATGAGAGTGGTTTGAACGCGCACTTTCGCGGTAAGAAGCACAAGGCCAAGGAAGCACTGGTGGGTGGGAAGTTTGGGTTTGATGCAAAAGCGGATATCCAGACACATCAACCTTGCACAGCCTTGGAAGAGGGAGGAATGATTCAGAACAATGCTGATACAAGTGCAGTGGAAGATAAAAAAGAGGAGCAGATAGTTCAGAAAAGCCAAAACATCAGTGTTTCTGAGATCAATGAAATAACAACTGAGGAAGCTGGGAAGACAAACACATTGGTAAAGAGAAAGAATGAGTTCTGGTGTGATATTTGTAGAATTAGTACTCTGTCTCAAGTTATGTTGGAAGAGCACAAAAAAGGGAGAAAGCATCGGAGAAAAATGGTGATCGGAATGAAGCAAAACAATGGGAGTGCCCCACCCACATCCTCTGCAGATAATTTTTCATGTTCAGATAAAGTGCATCCAGTGGCTGGTTCAAGAGAAGATAGAGTTGGTGAAGAGCTATGA | 1032 | 0.4748 | MQFKYRAIDNMSQPSPPSSTTPFPPFSDQPLGGAGGFTRMFPPTMTMSARGALQREVEKELIRREIISGEMARRRELEEEVRRELALERKLGIPMPEMFLNTVALDVMPPPQLCTLDLAEIKEANNQDQMQANPNPDRCDAKRKAEAPAVNDRTCSRLMKKPKKEWRCALCEVSATDESGLNAHFRGKKHKAKEALVGGKFGFDAKADIQTHQPCTALEEGGMIQNNADTSAVEDKKEEQIVQKSQNISVSEINEITTEEAGKTNTLVKRKNEFWCDICRISTLSQVMLEEHKKGRKHRRKMVIGMKQNNGSAPPTSSADNFSCSDKVHPVAGSREDRVGEEL* | 344 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lja4g2837 | 343 | SMART | c2h2final6 | 274 | 298 | IPR013087 | - | |
| Lja4g2837 | 343 | SMART | c2h2final6 | 166 | 190 | IPR013087 | - | |
| Lja4g2837 | 343 | SUPERFAMILY | beta-beta-alpha zinc fingers | 157 | 196 | IPR036236 | - | |
| Lja4g2837 | 343 | MobiDBLite | consensus disorder prediction | 1 | 16 | - | - | |
| Lja4g2837 | 343 | MobiDBLite | consensus disorder prediction | 307 | 343 | - | - | |
| Lja4g2837 | 343 | Gene3D | Classic Zinc Finger | 254 | 303 | - | - | |
| Lja4g2837 | 343 | PANTHER | OS06G0651300 PROTEIN-RELATED | 1 | 309 | - | - | |
| Lja4g2837 | 343 | SMART | ZnF_U1_5 | 271 | 303 | IPR003604 | GO:0003676|GO:0008270 | |
| Lja4g2837 | 343 | SMART | ZnF_U1_5 | 163 | 197 | IPR003604 | GO:0003676|GO:0008270 | |
| Lja4g2837 | 343 | PANTHER | OS06G0651300 PROTEIN | 1 | 309 | - | - | |
| Lja4g2837 | 343 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
| Lja4g2837 | 343 | MobiDBLite | consensus disorder prediction | 309 | 324 | - | - | |
| Lja4g2837 | 343 | SUPERFAMILY | beta-beta-alpha zinc fingers | 270 | 302 | IPR036236 | - | |
| Lja4g2837 | 343 | Gene3D | Classic Zinc Finger | 156 | 198 | - | - | |
| Lja4g2837 | 343 | Pfam | Zinc-finger of C2H2 type | 166 | 190 | - | - | |
| Lja4g2837 | 343 | Pfam | Zinc-finger of C2H2 type | 274 | 298 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lja4g2837 | Lja-Chr4 | 48086471 | 48088371 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lja4g2837 | 129 | 302 | C2H2 Transcription Factor Family | AT2G19380 | 24.457 | 2.02e-06 | 47.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lja4g2837 | - | - | cam:101503247 | 187.193 |