Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2834 ATGAACCCTGCAGTTATTTTCATCCTAGTAATTTTAGCAATTGTGGTTTTCATCTCTGCTCTCCTTCAATTGCTAGTTAGATTTCTCATGAAGCAGCAAAACAGGCCCTCTGGTTCATCAATTTTCCAATCCAATAGAAACCCTACTGAAATGTCTGAATCTGATCCTTACCAGAGACAGTTACAGCAGCTCTTCAATCTCCCTGATTTAGGGTTAGATCAGGCTTTCATTGATTCCCTCCCAATTTTCCTCTACGAAGAGATTATAGGTTTGAAAGAGGCATTTGATTTTGACTGTGCAGTTTGCCTTTCCCAATTCTCAGAACAAGACATGCTCAGATTGCTGCCAATTTGTAACCATGCTTTTCACATTCACTGCATAGACACTTGGCTTCTCACCAATTCAACTTGTCCTCTTTGTAGAGGGAGTCTTTATGAATCAGCCTTTGAATTTGAATTTGCAATTGAAAATCCAGTTTATGTTTTGGAGGAACGTGTGAGGGAAGAAGAGTGTGGGGGGGTTTCAGGAAGTGGTGGTGGTTCTTGTTGTGATGCTGCTGCTGCTTCTGTTAGCAAACACGCAGAGAAAGAAAATCACATAATGAATGGGAAAAGGGTGTTTTCTGTCAGGCTTGGAAAATTTAGAAGCTCAAATAATGGACCAGGGGTGGAAAGAAGTGAAGGAGAGTGCAGCAGTACTACTACTACTAGTGTTCTTGATGTTAGGAGATGCTATTCAATGGGGTCTTTTCAGTATGTGGTTGCTGATTCAGATTTGCAAGTGGCATTATGCACCAATAGAGGTGATAGAGGTGGTGGTAGTATGAGACAATTGAAAGGGAGATTAGCCCAATATGGGAATTCACCCATTGTTGAGGATGTAGTTGAGGAGAAAAAAATCAACATTGCTGGGACAGGGGAAAGCTATTCTGTTTCCAAGATCTGGCTGTGGTCCAGGAAGGATAAGGTCTCAAATTCACTAGAACCTCATTTGGATAATTCTTATGTCACTGCAACTTTGCCATGGAAGAATGGAGCTCAAGGTACATGA 1050 0.4133 MNPAVIFILVILAIVVFISALLQLLVRFLMKQQNRPSGSSIFQSNRNPTEMSESDPYQRQLQQLFNLPDLGLDQAFIDSLPIFLYEEIIGLKEAFDFDCAVCLSQFSEQDMLRLLPICNHAFHIHCIDTWLLTNSTCPLCRGSLYESAFEFEFAIENPVYVLEERVREEECGGVSGSGGGSCCDAAAASVSKHAEKENHIMNGKRVFSVRLGKFRSSNNGPGVERSEGECSSTTTTSVLDVRRCYSMGSFQYVVADSDLQVALCTNRGDRGGGSMRQLKGRLAQYGNSPIVEDVVEEKKINIAGTGESYSVSKIWLWSRKDKVSNSLEPHLDNSYVTATLPWKNGAQGT* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2834 349 SUPERFAMILY RING/U-box 76 147 - -
Lja4g2834 349 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 2 341 - -
Lja4g2834 349 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 2 341 - -
Lja4g2834 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 146 IPR013083 -
Lja4g2834 349 CDD RING-H2_PA-TM-RING 98 141 - -
Lja4g2834 349 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
Lja4g2834 349 SMART ring_2 99 140 IPR001841 -
Lja4g2834 349 Pfam Ring finger domain 98 141 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2834 Lja-Chr4 48029028 48030653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2834 20 322 C3H Transcription Factor Family AT2G18650 35.780 4.00e-46 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2834 - - lja:Lj0g3v0070649.1 638.262