Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2829 ATGGCATCAAGGTCATATGCTAATCTCTTAGATTTAGCTGATGGAGACTTGCTTGATATTCCTCAGACCCCAAGACCTCTTCCAAGAATAATGACCGTTCCTGGAATTATTTCTGAACTGGATGATGGGAATTCAGATGTTAGCTCTTCTGCATGTCGGGAGCGGAAAATCATTGTGGCAAACATGCTGCCCGTGCAGGCTCTAAGAGATGCAAAAACTGCTAAATGGGGCTTCAGTTGGGATGAAGATTCCATTTTATTACAATTAAAAGATGGTTTTTCTTCTGATACTGAGGTAATCTATGTGGGTTCTCTCAAGGTTGAAATTGATGTGAGTGAGCAGGAAGAAGTTGCCCAGAGGTTATTGGATGACTTTAATTGTGTACCCACCTTTCTACCCCATGATATGCAGAAAAATTTCTATCTTGGCTTTTGTAAGCAGCAGCTTTGGCCTCTCTTTCATTATATGCTGCCCATATGCCCCGATCATGGTGATCGCTTTGACCACTTGCTTTGGCAGGCTTATGTTTCTGCAAACAAAATCTTTTCAGATAAGGTTATGGAAGTAATTAATCCTGATGATGATTTTGTTTGGATTCATGACTATCACTTGATGGTTTTGCCTACTTTCTTGAGGAAACGATATAATCGAGTTAAACTTGGGTTCTTTCTGCACAGTCCTTTCCCTTCATCTGAAATTTACCGAACTTTGCCTGTAAGGGATGAAATTTTGAGGGGATTGTTAAATTCTGATTTAATTGGTTTTCATACATTCGACTATGCTCGTCACTTTCTTTCTTGCTGCAGTAGAATGCTAGGTCTGGACTATGAATCTAAGCGAGGACATATAGGGCTTGATTACTTTGGCCGCACTATATTTATTAAAATTTTGCCTGTAGGCATTCACATGGTCAGGCTTGAATCTGTATTAAATCTTCCTTCTACATCTGCTAAACTAAAAGAGGTTCAGGAAGAATTTAAGGGCAAGAAGGTAATTCTTGGTGTTGATGACATGGATATTTTTACGGGCATCAGTCTGAAACTTCTAGCTGTGGAGCAGCTGCTGCAGCGGAATCCAGATTTGCTGGGCACCGTTGTCCTTGTTCAAATTGTAAATCCAGCAAGGGGGTCTGGGAAGGATGTCCAGGAAGCAAAGAAAGAAGCATATCTAATTGCACAAAGAATCAATGATGCTTATGGTTCAAATCATTATAAGCCAGTCATTCTCATTGACCGTCCTGTTCCTCATTTTGAAAAGAGTGCCTATTATGCTGTTGCTGAATGTTGTATTGTCAATGCTGTAAGGGATGGCATGAACTTAGTCCCTTACAAATATGTTGTCTGCAGACAGGGAACTGCACAGCTGGATGAAGCATTGGGTAAAAAAATTGATTCTCCTTGTACAAGCATGCTTGTTGTGTCTGAGTTCATTGGTTGTTCACCTTCTCTGAGTGGGGCCATCAGGGTCAATCCCTGGGATATAGATGCTGTTGCTGATGCTCTGAACTTGGCCATTACAGTGAGTGATTCAGAGAAGCGATTGCGCCATGAGAAACACTATCGGTATATTAGTTCTCATGATGTGGCATATTGGGCTCGCAGCTTTATGCAGGATTTGGAGAGAGCCTGCAAAGATCATTACACCAAAAGGTGCTGGGGAATTGGCTGGCGCCTAGGATTTAAAGTTGTTTCTCTTTCTCCTGGATTTAGGAAGTTGTCCGTTGACCATATTGTTTCAGCATACAAAAGAACCAATAGAAGGGCCCTCTTTCTTGATTATGATGGTACTGTTGTACCACAATCTTGTATGAATAAAATCCCCAGTTCAGAAGTCATATCTGTGCTAAATTCTCTGTGTAATGATCCCAAGAATACTGTATTCATTGTAAGTGGAAGGGGAAGACATTCTCTGAGTGATTGGTTTACTTCATGCAAAATGCTGGGACTTGCAGCTGAACATGGGTACTTTTTAAGGTGGAATAGAGATTCTGAATGGGAAACTAGTCAGTTGTCTGCGGACCTTGATTGGAAAAAGACTGTGGAACCTGTCATGCAGCTGTATACAGAAACAACTGATGGATCTAATATTGAAGTTAAGGAAAGTGCTTTGGTGTGGCATCATCAAGATGCAGACCCTGATTTTGGTTCTTGCCAAGCCAAGGAATTGTTGGATCACTTGGAAAGTGTTCTTGCTAATGAACCAGCAGTTGTTAAGAGAGGCCAGCATATTGTTGAAGTCAAGCCACAGGGAGTGAGCAAGGGTTTGGTAGCTGAAAAGGTTCTTCGGACTATGGTTAATGACGGTAATCCACCAGATTTTGTATTGTGCGTTGGAGATGATAGGTCTGATGAAGACATGTTTGAGAGCATTTTGAAGACAGTCTCATGCCCGTCATTACCGTCGGTTCCAGAGATCTTTGCCTGCACTGTAGGTAGGAAGCCTAGCAAGGCCAAGTATTTTCTAGATGATACTTCTGATGTCTTAAAGATGCTCGAGGGCCTTGCTGCTTCATCCAATCCAAAGCCCAGGCATGTTGCCCAATTCCAGGTTTTCTTTTAG 2559 0.4174 MASRSYANLLDLADGDLLDIPQTPRPLPRIMTVPGIISELDDGNSDVSSSACRERKIIVANMLPVQALRDAKTAKWGFSWDEDSILLQLKDGFSSDTEVIYVGSLKVEIDVSEQEEVAQRLLDDFNCVPTFLPHDMQKNFYLGFCKQQLWPLFHYMLPICPDHGDRFDHLLWQAYVSANKIFSDKVMEVINPDDDFVWIHDYHLMVLPTFLRKRYNRVKLGFFLHSPFPSSEIYRTLPVRDEILRGLLNSDLIGFHTFDYARHFLSCCSRMLGLDYESKRGHIGLDYFGRTIFIKILPVGIHMVRLESVLNLPSTSAKLKEVQEEFKGKKVILGVDDMDIFTGISLKLLAVEQLLQRNPDLLGTVVLVQIVNPARGSGKDVQEAKKEAYLIAQRINDAYGSNHYKPVILIDRPVPHFEKSAYYAVAECCIVNAVRDGMNLVPYKYVVCRQGTAQLDEALGKKIDSPCTSMLVVSEFIGCSPSLSGAIRVNPWDIDAVADALNLAITVSDSEKRLRHEKHYRYISSHDVAYWARSFMQDLERACKDHYTKRCWGIGWRLGFKVVSLSPGFRKLSVDHIVSAYKRTNRRALFLDYDGTVVPQSCMNKIPSSEVISVLNSLCNDPKNTVFIVSGRGRHSLSDWFTSCKMLGLAAEHGYFLRWNRDSEWETSQLSADLDWKKTVEPVMQLYTETTDGSNIEVKESALVWHHQDADPDFGSCQAKELLDHLESVLANEPAVVKRGQHIVEVKPQGVSKGLVAEKVLRTMVNDGNPPDFVLCVGDDRSDEDMFESILKTVSCPSLPSVPEIFACTVGRKPSKAKYFLDDTSDVLKMLEGLAASSNPKPRHVAQFQVFF* 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2829 852 Gene3D Glycogen Phosphorylase B; 308 524 - -
Lja4g2829 852 SUPERFAMILY HAD-like 587 835 IPR036412 -
Lja4g2829 852 CDD HAD_TPP 588 829 - -
Lja4g2829 852 Pfam Glycosyltransferase family 20 55 540 IPR001830 GO:0003824|GO:0005992
Lja4g2829 852 Pfam Trehalose-phosphatase 590 825 IPR003337 GO:0003824|GO:0005992
Lja4g2829 852 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 847 IPR001830 GO:0003824|GO:0005992
Lja4g2829 852 Gene3D Glycogen Phosphorylase B; 48 307 - -
Lja4g2829 852 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 589 789 IPR006379 -
Lja4g2829 852 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 55 544 - -
Lja4g2829 852 TIGRFAM T6PP: trehalose-phosphatase 585 835 IPR003337 GO:0003824|GO:0005992
Lja4g2829 852 CDD GT20_TPS 55 540 IPR001830 GO:0003824|GO:0005992
Lja4g2829 852 Gene3D - 716 847 IPR023214 -
Lja4g2829 852 Gene3D - 586 704 IPR023214 -
Lja4g2829 852 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 9-RELATED 1 847 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2829 Lja-Chr4 47583333 47588481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2829 1 847 Trehalose Biosynthesis Gene Families AT1G23870 75.498 0.0 1365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2829 K16055 - gmx:100814952 1543.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2829 4 47583333 47588481 Lja4g2829 4 47583333 47588481 ECH