Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2827 ATGTCTCGGGTTTATGTTGGGAATTTGGACCCTCGTGTCTCTGAGAGGGATCTCGAAGACGAATTTCGCTTGTATGGTGTTCTGCGAAGTGTCTGGGTTGCACGTAGACCACCAGGATATGCATTTCTCGAGTTTGATGATAAGAGGGATGCACTGGATGCAATCCATGCTTTGGATGGAAAAAATGGCTGGCGTGTAGAGCTTTCTCATAATTCTAAGGGTGGTGGAGGAGGCCGTGGTGGTGGGCGTGGGCGTGGAGGTGAGGACCTGAAATGCTATGAATGTGGTGAACCTGGACACTTTGCTCGTGAGTGTCGCTCCCGCGGTGGTTCAAGAGGCCTGGGAAGTGGAAGGAGACGAAGTCCTAGTCCTTACCGGCGTCGTAGAAGTCCAAGTTATGGTTATGGCCGTAGGAGTTATAGTCCTCGTGGGAGGAGATCTCCAAGACCTCGTAGCATAACACCTCCTCTTCGTGGTCGCAGCAACAGCAGGTCCCCTCCATACCGTCATGCTCGTCGTGTTTCACCTTATGCTAATGGAGATTAA 546 0.5165 MSRVYVGNLDPRVSERDLEDEFRLYGVLRSVWVARRPPGYAFLEFDDKRDALDAIHALDGKNGWRVELSHNSKGGGGGRGGGRGRGGEDLKCYECGEPGHFARECRSRGGSRGLGSGRRRSPSPYRRRRSPSYGYGRRSYSPRGRRSPRPRSITPPLRGRSNSRSPPYRHARRVSPYANGD* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2827 181 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 179 - -
Lja4g2827 181 SMART rrm1_1 3 69 IPR000504 GO:0003723
Lja4g2827 181 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RSZ21A-LIKE ISOFORM X1 2 179 - -
Lja4g2827 181 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Lja4g2827 181 ProSiteProfiles Zinc finger CCHC-type profile. 91 107 IPR001878 GO:0003676|GO:0008270
Lja4g2827 181 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Lja4g2827 181 SUPERFAMILY Retrovirus zinc finger-like domains 81 109 IPR036875 GO:0003676|GO:0008270
Lja4g2827 181 SMART c2hcfinal6 91 107 IPR001878 GO:0003676|GO:0008270
Lja4g2827 181 Pfam Zinc knuckle 91 106 IPR001878 GO:0003676|GO:0008270
Lja4g2827 181 SUPERFAMILY RNA-binding domain, RBD 3 85 IPR035979 GO:0003676
Lja4g2827 181 MobiDBLite consensus disorder prediction 68 90 - -
Lja4g2827 181 CDD RRM_SRSF3_like 3 71 - -
Lja4g2827 181 Gene3D - 2 69 IPR012677 -
Lja4g2827 181 MobiDBLite consensus disorder prediction 104 181 - -
Lja4g2827 181 Gene3D - 87 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2827 Lja-Chr4 47531389 47534982 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2827 2 59 Eukaryotic Initiation Factors Gene Family AT1G22760 40.323 4.07e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2827 K12896 - csv:101213165 230.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2827 4 47531389 47534982 Lja4g2827 4 47531389 47534982 ECH