LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja4g2826	ATGGCTTCTGCACTGAAGATCTCAAGGCTCCTCTCTCGATCATCATTTTCTTCAATTTCTCGAGGTGGGAATGGTTACCTGGGTGCAACACTCTCTAAGTACAGTACTGCGTCTGCCGTTGAAGAACCCATTAAACCAGGAGTGGAAGTAGAACACACCCAGCTCTTAATTGATGGGAATTTCGTTGATGCTGCTTCTGGTAAAACTTTTCCAACGTTGGATCCCAGGACAGGGGAGGTGATTGCTCATGTTGCTGAGGGTAACTCTGAAGATGTTAATCGAGCAGTTGCAGCTGCGCGCAAAGCATTTGATGAAGGGCCGTGGCCTAAAATGACAGCCTATGAAAGGCAAAGGATAATGTTGCGTGCTGCTGATCTGATTGAAAAGCATAATGATGACATTGCAGCACTTGAGACTTGGGATAATGGGAAGACATATGAACAATCTGCTCAGATTGAAATTCCGATGCTGGTTCGCCTATTTCGTTATTATGCTGGTTGGGCAGATAAGATTCATGGTCTCACAATCCCAGCTGATGGGCCTCATCATGTGCAAACATTGCACGAACCCATTGGTGTTGCCGGTCAGATCATTCCTTGGAACTTCCCTCTTCTCATGTTTGCTTGGAAGGTGGGACCAGCATTGGCCTGTGGCAACACTATTGTTCTGAAAACAGCTGAGCAGACACCATTATCTGCTTTGTATGTAGCAAAACTACTTCATGAGGCTGGACTTCCTTCTGGTGTTTTGAATGTAGTATCTGGCTTTGGTCCTACTGCCGGTGCTGCTCTTGCTAGTCACATGGATGTGGATAAGCTCGCTTTTACTGGTTCAACTGACACTGGAAAAGCCGTCCTTGAATTGGCAGCAAGAAGCAATCTTAAACCTGTAACCTTGGAGCTTGGTGGGAAATCCCCCTTTATTGTATGTGAAGATGCTGATATAGATCAGGCTGTTGAGCTAGCACACTTTGCCTTATTCTTTAATCAGGGACAATGTTGCTGTGCCGGGTCTCGAACATTTGTTCATGAGCGCATATATGATGAGTTCGTACATAAAGCAAAGGCTCGTGCAGCGAAACGTGCTGTTGGCGATCCATTCAAGGGGGGAATAGAGCAAGGTCCTCAGATTGATTCAGACCAATTTGAGAAAATACTGAAGTATATTAGATCCGGTGTTCAAAATGGGGCTACCCTTGAAACTGGGGGAGATAGACTTGGTGACAAAGGCTTCTATATTCAGCCTACTGTCTTCTCAAATGTCCAGGATGACATGGTGATTGCAAAGGAAGAGATCTTTGGTCCAGTGCAAACCATATTAAAGTTCAAGGACCTTCGTGAGGTAATTCAAAGAGCAAATAACACACGTTATGGCCTTGCAGCTGGGATCTTCACAAAAGACATAGACACTGCAAATACATTGACTCGAGCATTGAAGGTTGGAACAGTGTGGGTAAATTGCTTTGATACATTTGATGCTGCAATTCCCTTTGGTGGATACAAGATGAGTGGACAGGGTAGAGAAAAAGGAGAGTACAGTCTTAAGAACTACTTGCAAGTGAAGGCTGTTGTTACGCCCTTGAAGAACCCAGCATGGCTTTGA	1602	0.4494	MASALKISRLLSRSSFSSISRGGNGYLGATLSKYSTASAVEEPIKPGVEVEHTQLLIDGNFVDAASGKTFPTLDPRTGEVIAHVAEGNSEDVNRAVAAARKAFDEGPWPKMTAYERQRIMLRAADLIEKHNDDIAALETWDNGKTYEQSAQIEIPMLVRLFRYYAGWADKIHGLTIPADGPHHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLSALYVAKLLHEAGLPSGVLNVVSGFGPTAGAALASHMDVDKLAFTGSTDTGKAVLELAARSNLKPVTLELGGKSPFIVCEDADIDQAVELAHFALFFNQGQCCCAGSRTFVHERIYDEFVHKAKARAAKRAVGDPFKGGIEQGPQIDSDQFEKILKYIRSGVQNGATLETGGDRLGDKGFYIQPTVFSNVQDDMVIAKEEIFGPVQTILKFKDLREVIQRANNTRYGLAAGIFTKDIDTANTLTRALKVGTVWVNCFDTFDAAIPFGGYKMSGQGREKGEYSLKNYLQVKAVVTPLKNPAWL*	534

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja4g2826	533	ProSitePatterns	Aldehyde dehydrogenases cysteine active site.	327	338	IPR016160	GO:0016491
	Lja4g2826	533	PANTHER	ALDEHYDE DEHYDROGENASE-RELATED	23	533	-	-
	Lja4g2826	533	Pfam	Aldehyde dehydrogenase family	61	523	IPR015590	GO:0016491
	Lja4g2826	533	PANTHER	ALDEHYDE DEHYDROGENASE FAMILY 2 MEMBER B4, MITOCHONDRIAL-LIKE	23	533	-	-
	Lja4g2826	533	CDD	ALDH_F2BC	50	525	-	-
	Lja4g2826	533	ProSitePatterns	Aldehyde dehydrogenases glutamic acid active site.	299	306	IPR029510	GO:0016491
	Lja4g2826	533	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 1	67	523	IPR016162	GO:0016491
	Lja4g2826	533	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 2	305	494	IPR016163	GO:0016620
	Lja4g2826	533	SUPERFAMILY	ALDH-like	49	527	IPR016161	GO:0016491

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja4g2826	Lja-Chr4	47518958	47522604	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja4g2826	3	533	Aldehyde Dehydrogenase Gene Family	AT3G48000	76.723	0.0	873

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja4g2826	K00128		-	gmx:100786773	946.421

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