Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2818 ATGATGCCAACACGTCTCTGGATTCTAGCCATTGGCTTCATTGGAGTTACACTAGTAGTGCTTCTTGCCGCCCTTGCAATGTTTGTCAAAAGAATTAGAACTGCTCCAACAATAGAACATGAGCTAGAGGATTCAACATCACTTAAGATAACTTTGGAGGATGTTTCTGTAGCCGCTAGGAATCTCAGCGCTTCAAATTTCATTGGCCAAGGAATAGCAGGAAAAGTTTACAAAGGTGTACTCTCCAACGGTCAATATGTTGCAGTTAAGCATATAATCAATGAAGGAGCCATGGAGACATTTGTTAGAGAAGTGAGGAGTCTTTCCCATGTCAAACATCCAAACCTAGTAGCTCTACTCGGATACTGTGAAAATAAAGTTGAATGCTTCCTGGTGTATGAACTGTGCCACAATGGAAACCTCTCAGAGTGGCTATTTGGAAATGATAAAGTTCTTTCATGGATTCAAAGACTAGAGATTGCTGTTGATAGTGCAAGAGGTCTTGAGTTTCTCCATACCTACCTAGGTGGCTGCATTGTTCATCGTGATATAAAGCCGTCAAACATTCTCATTGATTCCAACTTCAAAGCAAAGCTTTCAGACTTTGGGTTGTCCAGAGCTATGGACCCTGGTCAATCCTATGTGAGCTCTGAAGTGAGAGGAACATTTGGCTATATTGACCCTGAATATCGGAGCAATCACCATGTAAATGCATCAGGAGATGTCTACAGCTTTGGAATAGTGTTATTACAACTTCTATCAGGACAGAGGGTCCTGAACATCGATTTTCAGAGACCAGGGTCCCTAAGTAAAATGGCCAGAGATTTTGCAAGACGCGGTGATATTTCAGAATTCGCTGATCCTAAACTCAAAGGGGAGTACTCTGTAGAAGCATTTGAGATCACACTAAAGCTAGCTTTGTCTAGCATAGGGCTTAAGAAGCAAAGGCCCTCCATAGAACATGTGTTATATAGCCTAGTAAGGGCACTTGATATCTCATTATACGCGAAACCTTTTAAGTCCTGA 1026 0.4172 MMPTRLWILAIGFIGVTLVVLLAALAMFVKRIRTAPTIEHELEDSTSLKITLEDVSVAARNLSASNFIGQGIAGKVYKGVLSNGQYVAVKHIINEGAMETFVREVRSLSHVKHPNLVALLGYCENKVECFLVYELCHNGNLSEWLFGNDKVLSWIQRLEIAVDSARGLEFLHTYLGGCIVHRDIKPSNILIDSNFKAKLSDFGLSRAMDPGQSYVSSEVRGTFGYIDPEYRSNHHVNASGDVYSFGIVLLQLLSGQRVLNIDFQRPGSLSKMARDFARRGDISEFADPKLKGEYSVEAFEITLKLALSSIGLKKQRPSIEHVLYSLVRALDISLYAKPFKS* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2818 341 SUPERFAMILY Protein kinase-like (PK-like) 43 323 IPR011009 -
Lja4g2818 341 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Lja4g2818 341 Gene3D Transferase(Phosphotransferase) domain 1 136 334 - -
Lja4g2818 341 Gene3D Phosphorylase Kinase; domain 1 23 135 - -
Lja4g2818 341 Pfam Protein kinase domain 66 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2818 341 PANTHER OS01G0750732 PROTEIN 6 334 - -
Lja4g2818 341 ProSiteProfiles Protein kinase domain profile. 62 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2818 341 PANTHER - 6 334 - -
Lja4g2818 341 SMART serkin_6 62 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2818 Lja-Chr4 47368885 47371292 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2818 40 332 Receptor kinase-like Gene Family AT1G67720 39.130 3.42e-59 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-2 Lja4g2818 Pkinase 6.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2818 - - gmx:100790181 526.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2818 4 47368885 47371292 Lja4g2818 4 47368885 47371292 ECH