Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2812 ATGGATTTAGAAGGTCAGGGTCTGAATTTGGGGTTCTTTTGGGAAAACCAGCCATGGGGTACTCTTTCCAATTCTGATAACATAGGTGAGAGTAAAGAAAAGTTAGATATGAAGCCACAGAACAAGAAGGGAGAAGGAAATGGAGAAGACACTCTTGTGTATAAGAAGCGACGTCGAGGTAATAGAACAGAGAAGAATGTTGTTGCTGATGGTGAAGGGAAAGTTGATCATGAAGTGCATATAATGATTGAGAGAGAAAGAAGGAAGAAAATGAGGAACATGTTCGGTACCCTTCATGCTTTGCTTCCTCGGCTTCCCTCCAAGGCTGATAAATCAGCCATCATTGAGGAAACAGTGGACTACATAAAAACCCTGCAACAGACCCTCCAAAAGCTTGAGAAACATAAAAAAGAAAGGTTTCAATCATCTGTGGAACAACCTTATGACTTGAGGGAGGGCTTTATTCCTGATCTGGGATCTTCGACCAGCTTATCCTCTATAATGGTGGGAAGTAGAACTTCTTCAAATACTCCTATTTCATATAATTCAAATTCTCTACAACCTGTGGGTTTTGAAACATGGTCTTATCAAAACATAGTGTTGAACGTTACTGGATTTGAAGCGCAATTTTGCATTTCTACTGCCAAGAAGAAAAGTACATTAACCACTATTGCTTTTGTTCTGGAGAAGTACAAGATTGAGGTCATTTCTGCTAACATTGTATGCAATGATAATACAAATGTGTATCTCATTGTTACCCAAGCAAAACAAGATTCACATCTATTCCAAGATCTAAATTCAGTGACTGAAATTTACAAGCAAGCGGCAGGAGAAATTCAGCTATTCATCTCTTAA 855 0.3871 MDLEGQGLNLGFFWENQPWGTLSNSDNIGESKEKLDMKPQNKKGEGNGEDTLVYKKRRRGNRTEKNVVADGEGKVDHEVHIMIERERRKKMRNMFGTLHALLPRLPSKADKSAIIEETVDYIKTLQQTLQKLEKHKKERFQSSVEQPYDLREGFIPDLGSSTSLSSIMVGSRTSSNTPISYNSNSLQPVGFETWSYQNIVLNVTGFEAQFCISTAKKKSTLTTIAFVLEKYKIEVISANIVCNDNTNVYLIVTQAKQDSHLFQDLNSVTEIYKQAAGEIQLFIS* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2812 284 Gene3D - 75 150 IPR036638 GO:0046983
Lja4g2812 284 Pfam Helix-loop-helix DNA-binding domain 79 126 IPR011598 GO:0046983
Lja4g2812 284 CDD bHLH_AtbHLH_like 80 133 IPR045239 -
Lja4g2812 284 PANTHER TRANSCRIPTION FACTOR BHLH95 13 282 - -
Lja4g2812 284 PANTHER - 13 282 IPR044278 GO:0003700|GO:0006355|GO:0009960
Lja4g2812 284 SMART finulus 81 131 IPR011598 GO:0046983
Lja4g2812 284 MobiDBLite consensus disorder prediction 29 50 - -
Lja4g2812 284 MobiDBLite consensus disorder prediction 23 50 - -
Lja4g2812 284 Coils Coil 115 135 - -
Lja4g2812 284 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 78 135 IPR036638 GO:0046983
Lja4g2812 284 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 125 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2812 Lja-Chr4 47197343 47199422 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2812 11 284 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 35.484 1.00e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja4g2812 HLH 1.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2812 - - lja:Lj0g3v0099719.1 474.937