Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2808 ATGTTTCTCTCAGCTGCACTCTCCTCCACAACTTCCCACCTCACTATCCTCCCTTCTCTCATCACTTCCACAACCTCTCCACTTTCTCGCAGATTTTCCTTTACTTTCCTAGAAAACAGAAACCCAACAACCACAACAACCCTCTTCCCTTACAAGCAGAGACTCTTGGTAAAGTCTCAGGCTACTGCACCTGCTTCTTCTGAGGCAGTGAAAGTGTCACCTGTACCTTCTGAGATGAAAGCGTGGGTCTATGGGGAATATGGCGGTGTGGATGTTTTGAAATTTGATTCCAATGTTGCTGTGCCTGATTTGAAGGAGGATCAGGTCCTTGTTAGAGTTGTTGCTGCAGCTCTTAACCCTGTTGATGCCAAGAGAAGGCAGGGGAAGTTCAAAGCCACTGATTCTCCTCTTCCGACTGTTCCGGGCTACGATGTTGCCGGTGTGGTGGTGAAGGTTGGCAGTGAAGTAAAGGAGTTCAGAGTGGGTGATGAAGTATATGGAGATGTAAATGAGAAAGCACTAGAAGGGCCTAAGCAGTTTGGATCTCTGGCTGAGTACACAGCTGTTGAGGAGAAATTGTTGGCACCAAAACCTAAGAATTTGGATTTTGCTCAAGCCGCTTCTCTTCCTCTTGCAATTGAGACTGCTTATGAGGGTTTGGAGAGAACTGGATTTTCTTCTGGTAAATCCATTCTTGTCCTAAATGGTTCAGGTGGAGTTGGAAGCCTTGTTATTCAGCTTGCTAAGCAAGTTTTTGGAGCTGCAAGAGTTGCTGCAACTTCAAGCACTAGAAATTTGGAGCTTTTGAAAAGCCTGGGAGTTGATTTAGCTATTGACTACACAAAGGAGAACTTCGAAGACTTACCAGAGAAATTTGATGTTGTTTATGATGCCATCGGGCAATGTGACAGAGCAGTGAAGGCGATCAAAGAAGGTGGTAGTGTGGTAGCACTCACAGGTGCTGTTACACCACCTGGCTTCAGATTTGTAGTAACTTCCAATGGAACTGTTCTGAGGAAATTAAACCCTTATTTAGAGAGTGGAAAGGTGAAGCCAATTGTAGACTCCAAAGGTCCATTCCCTTTCACCCAACTAGCTGAAGCCTTCTCTTACCTTGAAACAAACCGAGCTACTGGAAAGGTTGTTATACATCCCATCCCATGA 1164 0.4519 MFLSAALSSTTSHLTILPSLITSTTSPLSRRFSFTFLENRNPTTTTTLFPYKQRLLVKSQATAPASSEAVKVSPVPSEMKAWVYGEYGGVDVLKFDSNVAVPDLKEDQVLVRVVAAALNPVDAKRRQGKFKATDSPLPTVPGYDVAGVVVKVGSEVKEFRVGDEVYGDVNEKALEGPKQFGSLAEYTAVEEKLLAPKPKNLDFAQAASLPLAIETAYEGLERTGFSSGKSILVLNGSGGVGSLVIQLAKQVFGAARVAATSSTRNLELLKSLGVDLAIDYTKENFEDLPEKFDVVYDAIGQCDRAVKAIKEGGSVVALTGAVTPPGFRFVVTSNGTVLRKLNPYLESGKVKPIVDSKGPFPFTQLAEAFSYLETNRATGKVVIHPIP* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2808 387 Gene3D - 86 383 - -
Lja4g2808 387 SUPERFAMILY GroES-like 76 233 IPR011032 -
Lja4g2808 387 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 53 387 - -
Lja4g2808 387 Pfam Alcohol dehydrogenase GroES-like domain 107 169 IPR013154 -
Lja4g2808 387 SMART PKS_ER_names_mod 88 383 IPR020843 GO:0016491
Lja4g2808 387 Gene3D - 220 334 - -
Lja4g2808 387 CDD MDR_like_2 79 383 - -
Lja4g2808 387 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 53 387 IPR044626 GO:0016628
Lja4g2808 387 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 228 249 IPR002364 GO:0008270|GO:0016491
Lja4g2808 387 Pfam Zinc-binding dehydrogenase 272 383 - -
Lja4g2808 387 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 201 324 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2808 Lja-Chr4 46835262 46839092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2808 103 275 Monolignol Biosynthesis Gene Families AT4G39330 24.623 8.53e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2808 K18980 - gmx:100810816 610.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2808 4 46835262 46839092 Lja4g2808 4 46835262 46839092 ECH