Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2807 ATGAAGGAACTGGCCGAATCATCATCATTATTACCGGACAAGGAAGATTTAAAAAAGAAGCTGGGTAAACGGCATCGTTCCAAGGATTCACCAAAAAACCACGATTCAGATTCTCCCCAAACTGCTCCGGTAGAGTCGCCACTGCCTCCATTGAAACCACCACCATCGTCTAAGGTTTTAGCTCCTTTGCCATCGCCGCCATTACCATCACCACCACCGCCGCCACCACCACAGTCCTCACCCCCTCCTCAACCACCCTCACCACCGCCACCCTCCCCACCACCACCACAATCACATTTTCCACCCTCTTCACCGCCGCCATCGCCGGTTAATAATCACCATTCCTCTATCGCTCCTCTAAATTTTAATCAACATAAATACTCATCGCCTCCAACACCCCCTGAAAACTCTTCATCTTCATCTTCATCTTCTCATAATGCTCCATCCAATGTATCGAATCATCAAGGGGTGCATGGAGGTGGGTCCCACGCGAAATCGACGGGTGAAAATTCAGGAAAATATGTTGGATATACCCTCGCAGGAGTTGTCATTGTTGCCTTTGTTGCTGTAGTTGTTGTTTTAACATTTAGGAGGAAGAAAACCAGACCAGATGTCCATGTTGCATATATGCATAACTTTCATCTTAAACCAGGTGCTGATGGGCATTACTTTATGCAGCAGCCTGGGCCACAACTTTCACTTGGAAGAAACTACGGAAGTGGTAACAACATTGGAGGAAGCATGAACCATCTTGGAGCTTCTTTAGACCCGTCACAACCCAAGAGTGGTCAGATAGCTTTCAGTTATGACATGGTGATGGAAATGACTAATGCATTTTCCAGTGAATACATAATAGGCCAAGGAGGATTTGGGTATGTTTATAAGGGTGTGTTGCCGGATGGAAAAGCAGTTGCAGTGAAGCAGCTTAGGGCTGGTAGTGGCCAGGGAGATAGGGAATTCACGGCTGAAGTGCAGATCATTAGCCGCGTACATCATCGGCATTTGGTGTCGTTGGTTGGTTATTGCATATCTGAGCAGCAAAGAGTGCTTATCTATGAGTATGTTCCTAATGGAACCCTCCATCATCACTTGCATGGAAGTGATATGCCTGTGTTGGATTGGGATAAGAGGCTGAAGATAGCAATTGGAGCTGCAAAGGGGCTGGCTTATCTGCATGAGGACTGCAGCCAAAAGATTATTCACAGAGATATTAAGTCAGCAAACATACTTTTGGATGACGCTTTTGAGGCACAGGTTGCAGACTTTGGACTGGCGAGGCTAGCCGACGCTGCCAATACCCATGTATCAACAAGGGTTATGGGGACCTTTGGGTACATGGCTCCAGAGTATGCAACAAGTGGAAAATTAACCGATAGATCAGATGTTTTCTCGTTCGGCGTTGTCCTCCTGGAGCTTATAACTGGAAGGAAACCTGTTGATGAATCCCAGCCTTTGGGAGATGAGAGTCTGGTTGAGTGGGCTCGTCCCCTTCTCCTTCGTTCATTTGAGACACGCGAATTTCGTGAACTAATAGACCCAAGACTCGAAAATCACTATGTCGAGGGTGAAATGTTCAGAATGATTGAGGCAGCTGCAGCTTGTATTCGCCACTGTGCTCCGAGACGGCCTCGTATGGCTCAGGTTGTAAGAGCTTTAGATAGTGGAGATGAAGCATTCGATTTATCTAATGGGGTGAAATATGGCCAAAGCACTGTCTATGATTCTGGGCAGTATGATAGAGACATTATGCTATTCAGAAGGATGACTAATGGCAGCTATGGTGATTCTGATTTTGACAAGATGTACAGTAGAGAATCAAGTTTATCAAGAGATACGAATAGATACCAACATGTGTGGATGCCTAGTAGTTCTAGTAGCAGCCGGTCAGAATCTAGCGCTTTCAACAAACATAAGAAAAACAGTGCTGAATGA 1932 0.4591 MKELAESSSLLPDKEDLKKKLGKRHRSKDSPKNHDSDSPQTAPVESPLPPLKPPPSSKVLAPLPSPPLPSPPPPPPPQSSPPPQPPSPPPPSPPPPQSHFPPSSPPPSPVNNHHSSIAPLNFNQHKYSSPPTPPENSSSSSSSSHNAPSNVSNHQGVHGGGSHAKSTGENSGKYVGYTLAGVVIVAFVAVVVVLTFRRKKTRPDVHVAYMHNFHLKPGADGHYFMQQPGPQLSLGRNYGSGNNIGGSMNHLGASLDPSQPKSGQIAFSYDMVMEMTNAFSSEYIIGQGGFGYVYKGVLPDGKAVAVKQLRAGSGQGDREFTAEVQIISRVHHRHLVSLVGYCISEQQRVLIYEYVPNGTLHHHLHGSDMPVLDWDKRLKIAIGAAKGLAYLHEDCSQKIIHRDIKSANILLDDAFEAQVADFGLARLADAANTHVSTRVMGTFGYMAPEYATSGKLTDRSDVFSFGVVLLELITGRKPVDESQPLGDESLVEWARPLLLRSFETREFRELIDPRLENHYVEGEMFRMIEAAAACIRHCAPRRPRMAQVVRALDSGDEAFDLSNGVKYGQSTVYDSGQYDRDIMLFRRMTNGSYGDSDFDKMYSRESSLSRDTNRYQHVWMPSSSSSSRSESSAFNKHKKNSAE* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2807 643 SMART serkin_6 279 520 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2807 643 MobiDBLite consensus disorder prediction 612 631 - -
Lja4g2807 643 MobiDBLite consensus disorder prediction 609 643 - -
Lja4g2807 643 MobiDBLite consensus disorder prediction 43 109 - -
Lja4g2807 643 ProSitePatterns Protein kinases ATP-binding region signature. 285 307 IPR017441 GO:0005524
Lja4g2807 643 MobiDBLite consensus disorder prediction 1 168 - -
Lja4g2807 643 MobiDBLite consensus disorder prediction 1 35 - -
Lja4g2807 643 PRINTS Proline rich extensin signature 86 107 - -
Lja4g2807 643 PRINTS Proline rich extensin signature 74 86 - -
Lja4g2807 643 PRINTS Proline rich extensin signature 50 66 - -
Lja4g2807 643 Gene3D Phosphorylase Kinase; domain 1 249 354 - -
Lja4g2807 643 Pfam Protein tyrosine and serine/threonine kinase 284 551 IPR001245 GO:0004672|GO:0006468
Lja4g2807 643 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK13-RELATED 91 623 - -
Lja4g2807 643 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 91 623 - -
Lja4g2807 643 ProSiteProfiles Protein kinase domain profile. 279 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g2807 643 ProSitePatterns Serine/Threonine protein kinases active-site signature. 399 411 IPR008271 GO:0004672|GO:0006468
Lja4g2807 643 Gene3D Transferase(Phosphotransferase) domain 1 355 566 - -
Lja4g2807 643 SUPERFAMILY Protein kinase-like (PK-like) 259 552 IPR011009 -
Lja4g2807 643 CDD STKc_IRAK 285 553 - -
Lja4g2807 643 MobiDBLite consensus disorder prediction 110 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2807 Lja-Chr4 46741820 46746864 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2807 87 608 Trihelix Transcription Factor Family AT1G70460 54.982 0.0 549
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Lja4g2807 PK_Tyr_Ser-Thr 8.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2807 - - gmx:100797563 691.034